Merge pull request #2816 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit '76d93a78fe583b99efa295cd44359092310172a3':
Revert "Merge pull request #2796 in HDFFV/hdf5 from small_chunk_io_opt to develop"
Revert "Merge pull request #2796 in HDFFV/hdf5 from small_chunk_io_opt to develop"
This reverts commit a7a8e6451a37d1bd072c7281b432f1436795daef, reversing
changes made to 30422a6b55a135ec406d484a6c66f995057e0a50.
Merge pull request #2796 in HDFFV/hdf5 from small_chunk_io_opt to develop
* commit 'ad9a2ceabe2dd9045111f8b57774948a124607b9':
Only initialize the contiguous or compact I/O info struct when needed.
Merge pull request #2806 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit '98754591b8dcf2be70957d67ec7172c53cbaa827':
Revert "Merge pull request #2477 in HDFFV/hdf5 from pio_update to develop"
Revert "Merge pull request #2477 in HDFFV/hdf5 from pio_update to develop"
This reverts commit ba80bcaff24113f438da0f40cb5b5479d4a21cc6, reversing
changes made to 522ef0dd5ca1daa2b26c3fe4459ddbb1eaf6ec20.
Merge pull request #2801 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:swmr_test_fail_cmake to develop
* commit '857e0f4404cb5a754d799110b89f0f16b503b4ce':
Fixes CMake issue with file locking variable
Fix HDFFV-11101
Description
Added initialization to local structs in the src function
H5MF_settle_raw_data_fsm() and the test function test_bt2_hdr_fd()
to prevent the following error in two different occurrences:
MemorySanitizer: use-of-uninitialized-value
Platforms tested:
Linux/64 (jelly)
Linux/64 (platypus)
Merge pull request #2477 in HDFFV/hdf5 from pio_update to develop
* commit 'a20bf599b682bfa0a91d571a922973e0c53b524a':
Don't track file offset position when using pread / pwrite.
Merge pull request #2734 in HDFFV/hdf5 from ~DYOUNG/werror:cse to develop
* commit 'fa7f8ad2f3fe509ff69dc574ddad0ae4d329ccca':
Improve code readability: extract common subexpressions into temporary variables.
Merge pull request #2735 in HDFFV/hdf5 from ~DYOUNG/werror:virtual-write-one to develop
* commit '7b48e3409a8c3ba1e83c929656e84196a6dc2e6d':
Fix a bug in H5D__virtual_write_one to stop an assertion from failing deep in H5Dwrite---project the *clipped* virtual selection instead of the virtual selection:
Fix a bug in H5D__virtual_write_one to stop an assertion from failing
deep in H5Dwrite---project the *clipped* virtual selection instead of
the virtual selection:
assertion "((src_space)->select.num_elem) == ((dst_space)->select.num_elem)"
failed: file "../../../vchoi_fork/src/H5Sselect.c", line 2617, function
"H5S_select_project_intersection"
with this backtrace:
at /home/dyoung/plain-nbsd/src/lib/libc/gen/raise.c:48
at /home/dyoung/plain-nbsd/src/lib/libc/stdlib/abort.c:74
fi...
Merge pull request #2794 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:h5f_start_swmr_write_locks_dev2 to develop
* commit 'f02ced7e7443563581930a6c2d58d1628608bbdd':
Moves lock flag to H5F_shared_t and adds test.
Adds fix for H5Fstart_swmr_write lock issue
Merge pull request #2769 in HDFFV/hdf5 from mdc_sl_opt to develop
* commit 'd00bab96fb4da12a18b5de528c96469978c4c927':
Minor copy edits to comments -- no code changes.
Tab to space conversions.
When flushing, the metadata cache attempts to flush entries in increasing address order. To facilitate this, the metadata cache needs a list of of dirty entries in increasing address order. This is implemented via a skip list of all dirty entries in the cache.
Tab to space conversions.
Re-applied tab to space conversions accidentally reverted in the
commit of the metadata cache skip list optimization, and performed
some additional tab to space conversions in passing.
Tested parallel / debug on Jelly.
When flushing, the metadata cache attempts to flush entries in increasing
address order. To facilitate this, the metadata cache needs a list of
of dirty entries in increasing address order. This is implemented via a
skip list of all dirty entries in the cache.
To date this skip list has been maintained at all times.
However, profiling indicates that we can avoid significant overhead by
constructing the skip list of dirty entries just before a flush, taking
it down afterwareds, and not mai...
Merge pull request #2784 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit '0d14414ddd860f24f1386771ed3ba8d2f5e2710d':
1. HDFFV-10830 part 2, move AC_CHECK_HEADERS([szlib.h] after AC_CHECK_LIB([sz], [SZ_BufftoBuffCompress] to avoid compiling H5Z.c with szlib.h after its path is removed from AM_CPPFLAGS. 2. Remove unnecessary links to ${HDF5_TOOLS_LIB_TARGET} in utils/mirror_vfd/CMakeLists.txt that prevent building HDF5 with tools disabled.
1. HDFFV-10830 part 2, move AC_CHECK_HEADERS([szlib.h] after
AC_CHECK_LIB([sz], [SZ_BufftoBuffCompress] to avoid compiling
H5Z.c with szlib.h after its path is removed from AM_CPPFLAGS.
2. Remove unnecessary links to ${HDF5_TOOLS_LIB_TARGET} in
utils/mirror_vfd/CMakeLists.txt that prevent building HDF5 with tools
disabled.
Fixed HDFFV-10933
Description:
Updated the original fix by Kent Y. in commit
200a77d8c3e51663c375aafffff607ae9b438f4e
- used internal functions instead of public API
- moved some code into the subroutine for a cleaner look.
- added test to dsets.c
Platforms tested:
Linux/64 (jelly)
Merge pull request #2776 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '6a344232f641135e6bc5f89d66a01c68d29bfa00':
Add testfiles
TRILABS-277 Use JIRA number as #ifdef
