hdf5

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Author Commit Message Commit Date Vailin Choi 93aa716f404M Merge pull request #520 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:hdf5_1_10 to hdf5_1_10 * commit '6403b313d46ec6db46fcff2aaa4a9238f8265d85': Incorporate additional code changes for the H5DOread_chunk patch from GE Heathcare (HDFFV-9934) This is the similar set of changes that was checked in to 1.8 branch: Incorporate the code changes that were missing from the original patch: (1) Additional tests in hl/test/test_dset_opt.c (2) Fix in src/H5Dchunk.c for direct access when an entry is in chunk... 16 May 2017 Vailin Choi 6403b313d46M Merge branch 'hdf5_1_10' of https://bitbucket.hdfgroup.org/scm/~vchoi/my_hdf5_fork into hdf5_1_10 16 May 2017 Dana Robinson 6e09fa2cb2eM Merge pull request #517 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:hdf5_1_10 to hdf5_1_10 * commit 'b74b1cd250755cbbe6ec337dc34634eb8b74b64a': Added a RELEASE.txt message for HDFFV-10187. 16 May 2017 Dana Robinson b74b1cd2507 Added a RELEASE.txt message for HDFFV-10187. 15 May 2017 Vailin Choi 55e2bcedc1a Incorporate additional code changes for the H5DOread_chunk patch from GE Heathcare (HDFFV-9934) This is the similar set of changes that was checked in to 1.8 branch: Incorporate the code changes that were missing from the original patch: (1) Additional tests in hl/test/test_dset_opt.c (2) Fix in src/H5Dchunk.c for direct access when an entry is in chunk cache but not dirty Tested on platypus, ostrich, kituo, mayll, osx1010test, moohan, quail, emu. 15 May 2017 Dana Robinson 0adad728135M Merge pull request #511 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:h5do_overwrite_1_10 to hdf5_1_10 * commit '1d786206df53942a3a3dbd538b369c94a632050d': Removed redundant assignement. Fixes the chunk overwrite bug (HDFFV-10187) and adds a new H5DO HL test. 11 May 2017 Dana Robinson 1d786206df5 Removed redundant assignement. 11 May 2017 Dana Robinson 3d8416251d3 Fixes the chunk overwrite bug (HDFFV-10187) and adds a new H5DO HL test. 09 May 2017 Vailin Choi 5e203972a98M Merge pull request #509 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:hdf5_1_10 to hdf5_1_10 * commit '228939e7315cc9644e158fc246f4908301d77a35': Call to H5Dopen has H5dopen2 arguments at line 12704 of test/dsets.c - changed to H5Dopen2 to fix failure with --with-default-api-version=v16 configure option. 11 May 2017 Larry Knox 228939e7315 Call to H5Dopen has H5dopen2 arguments at line 12704 of test/dsets.c - changed to H5Dopen2 to fix failure with --with-default-api-version=v16 configure option. 10 May 2017 Dana Robinson a45f5f8f533M Merge pull request #499 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:hdf5_1_10 to hdf5_1_10 * commit '1a4bda1bd824df2da1e8c3441881fb7fca6a4413': Set the HDF5_GENERATE_HEADERS CMake option to default to ON and removed the option from the CMake cache init files. 10 May 2017 Dana Robinson 1a4bda1bd82 Set the HDF5_GENERATE_HEADERS CMake option to default to ON and removed the option from the CMake cache init files. Fixes HDFFV-10184 27 Apr 2017 Vailin Choi bbca1b6fc6fM Merge pull request #500 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:hdf5_1_10 to hdf5_1_10 * commit 'd94405ded4451831e4fc90ceff70acbc1e6a8f9c': Fix for HDFFV-10051 Fix missing declaration for H5D__layout_compact_dirty_test(). Tested on mayll and osx1010test. Fix for the two issues reported in HDFFV-10051 Modifications made based on the review comments from pull request #494 Tested on moohan, mayll, kituo, platypus, ostrich, osx1010test, quail, emu. Fix for the two issues reported in HDFFV-1... 10 May 2017 Vailin Choi d94405ded44 Fix for HDFFV-10051 Fix missing declaration for H5D__layout_compact_dirty_test(). Tested on mayll and osx1010test. 09 May 2017 Vailin Choi 10a3bbe6802 Fix for the two issues reported in HDFFV-10051 Modifications made based on the review comments from pull request #494 Tested on moohan, mayll, kituo, platypus, ostrich, osx1010test, quail, emu. 08 May 2017 Vailin Choi f1c9163c912 Fix for the two issues reported in HDFFV-10051: (1) Repeated open/close of a compact dataset fails due to the increment of ndims in the dataset structure for every open. --This is done only for chunked dataset via H5D__chunk_set_sizes(). (2) layout "dirty" flag for a compact dataset is not reset properly after flushing the data at dataset close. --Reset the "dirty" flag before flushing the message to the object header via H5O_msg_write(). Tested on moohan, kituo, platypus, ostrich, osx1010tes... 06 May 2017 Larry Knox b8d68f31604M Merge pull request #492 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10 * commit '2c1e727b803203f2188c2d2854501c5a5b8efb23': Update one missed version string. 05 May 2017 Larry Knox 2c1e727b803 Update one missed version string. 05 May 2017 Larry Knox 9c169ec1c8dM Merge pull request #489 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10 * commit '5cde315a061d789ea9539265f96ec65454454983': Update release_docs/HISTORY-1_10.txt and RELEASE.txt after HDF5 1.10.1 release. 05 May 2017 Larry Knox 5cde315a061 Update release_docs/HISTORY-1_10.txt and RELEASE.txt after HDF5 1.10.1 release. 04 May 2017 Larry Knox 500fe19d36fM Merge pull request #479 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to hdf5_1_10 * commit '4fb75982b1c1f896d5d42798fb5a253ffe008166': Change position of declaration to top of block 27 Apr 2017 Allen Byrne 4fb75982b1c Change position of declaration to top of block 27 Apr 2017 Vailin Choi cb12277b5f3M Merge pull request #477 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:hdf5_1_10 to hdf5_1_10 * commit 'ae05b0c726f565a13aed9a8edeefb39299c1ca6d': Modifications based on pull request review. Made couple changes based on the review comments. Incorporate patch from GE Healthcare (HDFFV-9934) This is the same patch that had already been integrated to 1.8 branch (pull request #387). Tested on moohan, ostrich, platypus, emu, osx1010test, quail, kituo, mayll. 26 Apr 2017 Vailin Choi ae05b0c726f Modifications based on pull request review. Made couple changes based on the review comments. 26 Apr 2017 Vailin Choi 14e9856778e Incorporate patch from GE Healthcare (HDFFV-9934) This is the same patch that had already been integrated to 1.8 branch (pull request #387). Tested on moohan, ostrich, platypus, emu, osx1010test, quail, kituo, mayll. 25 Apr 2017 Dana Robinson 8f049c87366M Merge pull request #469 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:hdf5_1_10 to hdf5_1_10 * commit '14bc39bcb59ce36d1d2fd156afeaf3aa7bb5ad84': Updated bin/trace to emit errors and reordered autogen.sh processing so that script failures leave the library in a non-compilable state, making it harder to ignore errors. 25 Apr 2017 Dana Robinson 14bc39bcb59 Updated bin/trace to emit errors and reordered autogen.sh processing so that script failures leave the library in a non-compilable state, making it harder to ignore errors. 25 Apr 2017 Larry Knox b962c7ad420M Merge pull request #467 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to hdf5_1_10 * commit 'b3fb91a932546724344205529a37226aaa34367e': HDFFV-10173 revert and add dynlib flags 25 Apr 2017 Allen Byrne b3fb91a9325 HDFFV-10173 revert and add dynlib flags 25 Apr 2017 Allen Byrne c9779df05a4M Merge pull request #465 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to hdf5_1_10 * commit '545fa4028aabec0e683351762f42eb4ffa5a5b7e': Merge cmake h5clear test changes Correct name of native function Change signature of H5PLget_size 25 Apr 2017 Allen Byrne 545fa4028aa Merge cmake h5clear test changes 25 Apr 2017 Allen Byrne 539f252fc89 Correct name of native function 24 Apr 2017 Allen Byrne 2599c231642 Change signature of H5PLget_size 24 Apr 2017 Vailin Choi 61d979c1e91M Merge pull request #461 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:hdf5_1_10 to hdf5_1_10 * commit '6449f650e65a212f73b8ec551b699dd9991c6dde': Fix for HDFFV-10166 h5watch tests fail randomly to match expected output files (1) Re-structure tests to do one "extend" action at a time (2) Re-try test till max limit before final failure 24 Apr 2017 Vailin Choi 6449f650e65M Merge branch 'hdf5_1_10' of https://bitbucket.hdfgroup.org/scm/~vchoi/my_hdf5_fork into hdf5_1_10 24 Apr 2017 Vailin Choi 772bfce6ce3M Merge pull request #460 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:hdf5_1_10 to hdf5_1_10 * commit 'ddd8cf0e1c0c1450de1c37ba866afad469cf63b3': Modifications based on review comments from pull request. Made changes according to review comments and discussion with Allen. Fix for DAILYTEST-259 h5clear test failure Deposit the test files in test/misc/testfiles for testh5clear.sh to use instead of depending on h5clear_gentest. Tested on kituo, osx1010test, quail, platypus and ostrich. 24 Apr 2017 Vailin Choi c40edf8c247 Fix for HDFFV-10166 h5watch tests fail randomly to match expected output files (1) Re-structure tests to do one "extend" action at a time (2) Re-try test till max limit before final failure 21 Apr 2017 Vailin Choi ddd8cf0e1c0 Modifications based on review comments from pull request. Made changes according to review comments and discussion with Allen. 19 Apr 2017 Vailin Choi 22d54edf90d Fix for DAILYTEST-259 h5clear test failure Deposit the test files in test/misc/testfiles for testh5clear.sh to use instead of depending on h5clear_gentest. Tested on kituo, osx1010test, quail, platypus and ostrich. 18 Apr 2017 Dana Robinson 21850aa3637M Merge pull request #456 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:hdf5_1_10 to hdf5_1_10 * commit '87ceb783920c63cf374c08f17d7d601923481459': Fixed problems that prevent bin/trace from marking up some functions. 24 Apr 2017 Dana Robinson 87ceb783920 Fixed problems that prevent bin/trace from marking up some functions. 20 Apr 2017 Larry Knox c0a8eb362ccM Merge pull request #450 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:hdf5_1_10 to hdf5_1_10 * commit '15f85df5405eb2caf6ee4d3bc5f558344d4bb16a': bin/trace updates in H5PL.c The cache_image test shows a skipped message about EoC in parallel. Added code to disable the evict-on-close feature in the parallel library. 21 Apr 2017 Dana Robinson 15f85df5405 bin/trace updates in H5PL.c 20 Apr 2017 Dana Robinson cbab16c8f27 The cache_image test shows a skipped message about EoC in parallel. 20 Apr 2017 Dana Robinson 2b936c79e24 Added code to disable the evict-on-close feature in the parallel library. 19 Apr 2017 Allen Byrne 7037520281fM Merge pull request #445 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to hdf5_1_10 * commit '6126528f115757afe0b5aeb8f0a934b6a51946f4': Correct typo of file name 20 Apr 2017 Allen Byrne 6126528f115 Correct typo of file name 20 Apr 2017 Scot Breitenfeld 2b7a833c2d3M Merge pull request #439 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:hdf5_1_10 to hdf5_1_10 * commit '1f5ea1a71ac1a859fee9cad0b4672ea6f603981d': added point to build script repo. 18 Apr 2017 Scot Breitenfeld 1f5ea1a71ac added point to build script repo. 18 Apr 2017 Allen Byrne be67b32c90cM Merge pull request #437 in HDFFV/hdf5 from 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