Author Commit Message Commit Date Mohamad Chaarawi d99a7dfe7db [svn-r24605] - fix bug with point selections
- allow for H5S_ALL dataspace inputs
- allow use of scalar dataspaces
- update tests 02 Jan 2014 Mohamad Chaarawi 90f4424e082 [svn-r24603] - capture oid index metadata information on every tr_finish.
- add special bootsrapping option on H5Fopen when file does not shut down with H5Fclose
- add fixes to allow library to build properly without EFF third party libs
- fix several bugs
- fix issues reported by valgrind 31 Dec 2013 Mohamad Chaarawi 8965bb188ca M [svn-r24594] Merge from VOL branch.
Update plist encode/decode pre-generated files for newly added properties. 26 Dec 2013 Mohamad Chaarawi 928d398be41 M [svn-r24593] merge from trunk 23 Dec 2013 Mohamad Chaarawi 3c9424e67dc [svn-r24590] more cleanup. 20 Dec 2013 Mohamad Chaarawi c2e3b745b35 [svn-r24589] modifications before packaging. 20 Dec 2013 Ruth Aydt 2c50e5fa460 [svn-r24587] 1) Removed the workaround that forced rank 0 to do the abort call, as lower layers now working
properly when abort/updates occur in various orders across nodes and there are no more dangling
open objects that caused file close to fail previously.
Also removed the -w option that toggled the workaround off.
2) Changed output for 2D datasets to use row: not r: to indicate row number because r: was
messing up my post-processing grep for specific ranks. 17 Dec 2013 Mohamad Chaarawi 4c39196976a [svn-r24586] fix test for H5O routines. 17 Dec 2013 Mohamad Chaarawi 00786a22ef9 [svn-r24585] always need a barrier before EFF_finalize(). 17 Dec 2013 Mohamad Chaarawi 0d4024e9a4f [svn-r24584] Fix abort from all ranks problem (at least for now). 17 Dec 2013 Ruth Aydt 50704b41afe [svn-r24583] remove -i option (initialize 2D dataset /DC) now that iod returns 0's when cells
are read that haven't previously been written (but that are within the dataset's
space boundaries. 16 Dec 2013 Jerome Soumagne b710320c3d0 [svn-r24582] A few more printfs and tweaks 15 Dec 2013 Jerome Soumagne 03983be434d [svn-r24581] Some more tweaks to printfs and example / make my_rank global 15 Dec 2013 Mohamad Chaarawi 949c57139b1 [svn-r24580] minor thing. 15 Dec 2013 Jerome Soumagne b08073a450f [svn-r24579] Update analysis example 15 Dec 2013 Ruth Aydt 83047d98632 [svn-r24578] Final updates to 6.2 demo code - mostly cosmetic changes to print output formatting, etc.
Change -w to disable abort workaround, rather than enable
runDemo6.2 runs on 2 processes, redirects output, and has some post-procesing of the captured output.
runDemo6.2A does the same, but with the -a option to abort transaction 3. 15 Dec 2013 Jerome Soumagne a69deb6b48e [svn-r24577] Modify way bulk data is transferred after split 15 Dec 2013 Mohamad Chaarawi 6103baa63f5 [svn-r24576] minor updates 15 Dec 2013 Ruth Aydt 1baf27736e0 [svn-r24575] - removed "Extend" code as not supported yet at IOD level
- finished off code we'll demo for "append" feature. Good enough.
- added -i option that says to initialize data in 2D array when created (to -1s)
- other minor stuff 15 Dec 2013 Mohamad Chaarawi 471418f02c6 [svn-r24574] another fix for space selection for obj-map. 15 Dec 2013 Mohamad Chaarawi c8e0fbbcd7e [svn-r24573] fix dataspace generation from layout. 15 Dec 2013 Ruth Aydt fde7d6e1b7e [svn-r24572] Added -w flag. (workaround)
When used in conjunction with -a, only rank 0 will abort tr 3.
When -a used alone all ranks will abort tr 3 & sometimes an object isn't closed properly & so file close fails. 15 Dec 2013 Jerome Soumagne 150b86065c7 [svn-r24571] Revert change from commit 24567 where analysis became shipped twice 15 Dec 2013 Jerome Soumagne ea96837a41d [svn-r24570] Removed axe_info param that was in analysis_farm_in_t
Fixed local/farmed execution (use server_idx to get split data from remote
servers) / matches loc string
Still can't read data from iod... 15 Dec 2013 Jerome Soumagne 351b0c373a2 [svn-r24569] More fixes for address translation with loc and reenable farming 14 Dec 2013 Mohamad Chaarawi bac56f8f694 [svn-r24568] initialize step in attr_delete and link_delete 14 Dec 2013 Mohamad Chaarawi e82bed7e21c [svn-r24567] replace layout with map. 14 Dec 2013 Ruth Aydt 1d5473bec26 [svn-r24566] Add define SHOW_H5A_DELETE_BY_NAME_ISSUE and corresponding ifdefs that demonstrate the problem with H5Adelete_by_name when called
using an aborted transaction. The later file close fails because some objects are still open from this call.
#define SHOW_H5A_DELETE_BY_NAME_ISSUE and run with mpiexec -n 2 ./h*demo -a > & output to see the problem.
This code shoudl be removed when issue is resolved. 14 Dec 2013 Ruth Aydt 0a82d88dd18 [svn-r24565] Add command line parameters
-a to abort transaction 3
-v (verbose) to print CV contents all throughout the program, not just at the end. The prints throughout trigger reads that can be helpful in debugging (and that will show in live demo that changes are happening) 14 Dec 2013 Jerome Soumagne dc3a1e4bad3 [svn-r24564] Add server_loc_g that contains list of loc strings 14 Dec 2013 Ruth Aydt 1bc7ec39e7d [svn-r24563] Remove the DEBUG lines by the delete link commands - the issue is now fixed.
other minor edits. 14 Dec 2013 Jerome Soumagne 75cdd83b152 [svn-r24562] More fixes and debug printing to analysis server 14 Dec 2013 Mohamad Chaarawi 98672aaef6d [svn-r24561] fix bug from earlier commit to fix aborts in the middle of creates/deletes. 14 Dec 2013 Jerome Soumagne e64a3d33f23 [svn-r24560] Don't ship split request if data is local to master
More cleanup
Fake layout for now 14 Dec 2013 Jerome Soumagne 0a64574ac5b [svn-r24559] Merge previous version of analysis test 14 Dec 2013 Jerome Soumagne f61ac90233b [svn-r24558] Forgot to update examples to match testff 14 Dec 2013 Jerome Soumagne 164a39c39cf [svn-r24557] More rework of server analysis code
Add debug info for query_map
Separate collective container open/close request
Separate H5VL__iod_farm from execute
Fix a couple of warnings
Add open for the metadata scratch pad 14 Dec 2013 Jerome Soumagne e8be41ddc75 [svn-r24556] Add barrier before EFF_finalize 14 Dec 2013 Ruth Aydt a2e44501f1b [svn-r24555] - Many updates to fix assertion checking ... look for values < 0 as errors.
- Many updates to let things fail without stopping the application - failure return codes for update operations are expected
when transactions are aborted.
- Rather than use assert to check return codes, added STATUS macro & some in-code if ()'s to print OK or FAILED rather than
abort
- Reformatted output of print_container_contents to be easier to read & more compact.
- Other misc changes.
- THIS V... 14 Dec 2013 Mohamad Chaarawi f8600644977 [svn-r24554] fixes to creates/deletes as transaction is aborted. 14 Dec 2013 Jerome Soumagne 221190f1ff0 [svn-r24553] Add error handling for get_layout 13 Dec 2013 Jerome Soumagne 497123f7ea4 [svn-r24552] Add transaction stuff for analysis server 13 Dec 2013 Mohamad Chaarawi ccdeac1b9ac [svn-r24551] updates to extend. 13 Dec 2013 Jerome Soumagne 885dd15ed09 [svn-r24550] Fix global container open on server for analysis 13 Dec 2013 Jerome Soumagne 407ce357cb1 [svn-r24549] Fix H5VL__iod_create_and_forward for HG_ANALYSIS_EXECUTE 13 Dec 2013 Jerome Soumagne 74c79c59db7 [svn-r24548] update analysis shipping client to test with native write 13 Dec 2013 Mohamad Chaarawi 9eeb1d81b20 [svn-r24547] fix open by token to take tid rather than rcxt 13 Dec 2013 Mohamad Chaarawi 6bd996d6fe1 [svn-r24546] fix stride for IOD arrays translation. 13 Dec 2013 Mohamad Chaarawi 6c137008409 [svn-r24545] add Python ifdefs where needed. 13 Dec 2013 Jerome 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