Frank Willmore
  1. Frank Willmore

hdf5_der

Dana Robinson
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AuthorCommitMessageCommit Date
Dana RobinsonDana Robinson
9368ba5c662[svn-r29345] Merge of r29326, 29340, 29341 from trunk. C++ and h5check_version changes. Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial w/ C++ and Fortran
Dana RobinsonDana Robinson
de46c57b673[svn-r29343] Merge of r29332, 29336, 29337 from trunk. C++ and Fortran changes. Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial w/ C++ and Fortran
Dana RobinsonDana Robinson
b0cfc6ed76b[svn-r29335] Merge of r29292, 29301, 29306, 29307, 29312, 29314, 29322, 29325 from trunk. C++ and a few misc changes. Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial w/ C++ and Fortran bin/cmakehdf5 w/ C++ and Fortran
Dana RobinsonDana Robinson
c3ad0376099[svn-r29331] Merge of r29150 from trunk segfault on corrupted file fix Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial
Vailin ChoiVailin Choi
6a59ea16edc[svn-r29329] Revert the changes to h5watch.c that was checked in (#29328) by mistake. Tested on osx1010test, kituo, platypus, ostrich.
Vailin ChoiVailin Choi
811ff592891[svn-r29328] Change H5D_BT2_NODE_SIZE from 512 to 2048 for performance issue. Tested on quail, osx1010test, platypus, ostrich, kite, emu, mayll, kituo.
Frank BakerFrank Baker
a7a4e507fda[svn-r29320] Update COPYING for 2016.
Allen ByrneAllen Byrne
650cf8e0263[svn-r29315] Add Java option
Dana RobinsonDana Robinson
a8abec4d66b[svn-r29303] Merge of r29295 (packet test v1.6 fix) from trunk. Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial w/ v1.6 default
Dana RobinsonDana Robinson
39db5f21536[svn-r29299] Merge of r29202 (HDFFV-9697 fix) from trunk. Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial w/ Fortran and C++
Dana RobinsonDana Robinson
ad9d68b32e5[svn-r29297] Merge of r29182 and 29183 (fix for HDFFV-8740) Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial w/ Fortran and C++
Dana RobinsonDana Robinson
0a57cb562c1[svn-r29291] Merge of r29226-29259 from trunk. Mostly java JNI + a few smaller merges. Tested on: h5committest.new jam w/ java
Dana RobinsonDana Robinson
c95332e8aea[svn-r29289] Merge of r29222, 29261, 29270, 29272, 29274, 29275 from trunk tools patches Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial
Dana RobinsonDana Robinson
f0373879357[svn-r29287] Merge of r29269, 29270, 29272 from trunk. packet table improvements Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial w/ Fortran and C++
Dana RobinsonDana Robinson
ec908e7ab63[svn-r29286] Merge of r29155, 29162, 29163, 29165, 29169, 29172 from trunk. Fortran fixes and improvements Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial w/ Fortran and C++ autotools parallel (MPICH 3.1.4) w/ Fortran
Dana RobinsonDana Robinson
75ca3cefab1[svn-r29284] Merge of r29086, 29088, 29096 from trunk Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial w/ Fortran & C++ autotools parallel (production, MPICH 3.1.4) w/ Fortran
Dana RobinsonDana Robinson
46d2c5a5d6a[svn-r29282] Merge of r29081 from trunk (phdf5_metadata_opt branch merge) Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial w/ Fortran & C++ autotools parallel (MPICH 3.1.4) w/ Fortran
Dana RobinsonDana Robinson
14c349be63a[svn-r29277] Tidying of H5C_load_entry() before complicated merge. No significant code changes. Smoke checked on 64-bit Windows 10 with VS 2015 Pro.
John MainzerJohn Mainzer
f3763db6b88[svn-r29264] Checkin of fix for assertion failure exposed by Mark Miller's testhdf5 benchmark. In essence, the problem was failure to set appropriate tags when protecting entries in the fractal heap sanity check code. This resulted in H5AC protect failing when H5C_DO_TAGGING_SANITY_CHECKS is set. This bug was only detected in Mark Miller's bench mark as the existing test code did not generate the cache contents necessary to execute the pathway in which the failure occurred. Cleaned up t...
Dana RobinsonDana Robinson
ee3a977d05d[svn-r29255] Merge of r29076 from trunk (phdf5_metadata_opt branch normalization) Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial w/ Fortran & C++ autotools parallel (MPICH 3.1.4) w/ Fortran
Dana RobinsonDana Robinson
ebdfc3e61f7[svn-r29253] Merge of r29057 from trunk (dxpl checks in debug builds) Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial w/ Fortran and C++ autotools parallel (MPICH 3.1.4) w/ Fortran bin/cmakehdf5 (CMake 3.3.2)
Dana RobinsonDana Robinson
611ff725893[svn-r29251] Restored some missing edge chunk optimization code that was not merged. Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial
Frank BakerFrank Baker
e8ce105f5e1[svn-r29318] Update COPYING for 2016.
Dana RobinsonDana Robinson
f5cd7bc703a[svn-r29268] Disabled CMake generated header auto-generation to allow concurrent CMake and autotools testing in the branch.
Dana RobinsonDana Robinson
9aae7d77b27[svn-r29225] Re-ran autogen.sh on THG machines to update autotools output files. Tested on: jam
Dana RobinsonDana Robinson
8249dc6e3d4M[svn-r29224] Brought alpha2 branch in sync with revise_chunks (up to r29219) Note: generated autotools files are from a VM and not THG machines. These will be updated immediately after check-in. Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial w/ Fortran & C++ autotools parallel (MPICH 3.1.4) w/ Fortran CMake serial (cmakehdf5 w/ CMake 3.3.2)
Dana RobinsonDana Robinson
8cd0b0aff85[svn-r29219] Merge of r29062, 29074, 29092 Fortran VDS wrappers and bugfixes. Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial w/ Fortran autotools parallel w/ Fortran
Dana RobinsonDana Robinson
0c7eab89e3c[svn-r29210] Merge of r28950 and 28957 from trunk Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial w/ Fortran & C++ autotools parallel (MPICH 3.1.4) w/ Fortran
Dana RobinsonDana Robinson
9dff3541bb8[svn-r29208] Merge of r29032 from trunk Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial w/ Fortran & C++ autotools parallel (MPICH 3.1.4) w/ Fortran
Dana RobinsonDana Robinson
1180666bf86[svn-r29206] Merge h5dump VDS support from trunk: r29186, r29190, r29198 Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial cmakehdf5 (CMake 3.2.2) chkmanifest
Dana RobinsonDana Robinson
79b36d3a6a1[svn-r29205] Merge from trunk: r28635, 28902, 29030, 29034, 29035, 29119, 29132, 29158 Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial (debug w/ C++ & Fortran)
Dana RobinsonDana Robinson
8ac8326061b[svn-r29193] Added POSIX wrappers for a few SWMR test functions that were missed. Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial CMake serial (build only)
Dana RobinsonDana Robinson
a4fa2198b13[svn-r29189] Updated CMake to build SWMR and SWMR VDS test files. Many SWMR test files were updated to include h5test.h and use HD posix function wrappers so they will compile on Windows. Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 & CMake 3.3.2 64-bit Windows 10 w/ VS 2015 Pro & CMake 3.3.1
Dana RobinsonDana Robinson
1c8dfd918b2[svn-r29159] Merge of r29019 from trunk. Fixes double declaration of a couple of types from the LFS changes. Tested on: 64-bit Windows 10 w/ VS 2015 Pro
Dana RobinsonDana Robinson
649616ed99f[svn-r29148] Merged autotools LFS changes (r29011) from trunk. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial (debug w/ C++ & Fortran) autotools parallel (MPICH 3.1.4, debug w/ Fortran)
Dana RobinsonDana Robinson
26e52066be1[svn-r29146] Merged autotools changes from the trunk: r29050, 29090, 29127, 29129, 29131, 29134, 29139, 29142 Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial (debug/release w/ C++ & Fortran) autotools parallel (MPICH 3.1.2, debug w/ Fortran)
John MainzerJohn Mainzer
c4ef0b65a04[svn-r29136] Added code to main routine of objcopy to close the FAPL fapl2 shortly before exit. This in turn hides the property list management failure that is otherwise expressed on library shutdown when run with either the split or multi file drivers. Needless to say, this is a bandaid. The actual cause of the problem must be found and dealt with. Tested on Jam -- serial/debug/check-vfd
John MainzerJohn Mainzer
9490d3aff47[svn-r29114] Updated test code of HDFFV-9672 to correct error exposed by builds with the --with-default-api-version=v16 configure option. Tested on Mercury (serial/debug & serial/debug/v16_api) Jam (serial/debug) NOTE: In the serial/debug test on Mercury, I encountered the following assertion failure in testh5watch.sh: H5Fsfile.c:63: H5F_sfile_assert_num: Assertion `H5F_sfile_head_g == ((void *)0)' failed. As this was clearly unrelated to my change, I went ahe...
John MainzerJohn Mainzer
4e7c243a442[svn-r29103] Checkin of test code for fix of HDFFV-9672. Tested: jam serial/debug mercury serial/debug, parallel/debug
Dana RobinsonDana Robinson
6c60f4f78cf[svn-r29099] Merged r29094 from trunk. Fixes H5B slowdown. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial CMake serial
Dana RobinsonDana Robinson
4ba33c06209[svn-r29068] Minor clean up of mixed tabs and spaces in testswmr.sh.in. Tested on: Local linux VM (testswmr.sh only)
Vailin ChoiVailin Choi
5f5b8a2e9db[svn-r29064] Update MANIFEST due to checkin #29048 to revise_chunks. Tested on jam, moohan, osx1010test.
Quincey KoziolQuincey Koziol
363e4193401[svn-r29054] Description: Correct error computing the number of bytes to encode dimensions with when using "latest format" by including the datatype's size in the computation. Tested on: Mac OSX/64 10.11.3 (amazon) w/serial & parallel (h5committest not required on this branch)
Dana RobinsonDana Robinson
65ba538f5b6[svn-r29052] Merged r28735 from HDF5 1.10.0 alpha branch. Fix for incorrect chunk size setup with array types in new chunk indices (extensible and fixed arrays, v2 B-trees) which was reported by ITER (JIRA issue SWMR-99). Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 Autotools serial, parallel (MPICH 3.1.4)
Vailin ChoiVailin Choi
56a8a212ebc[svn-r29048] Fix to h5format_convert tool: (1) Downgrade layout version to 3 for contiguous and compact dataset (2) Add new test files for testing with/without messages in superblock extension. Tested on jam, osx1010test, platypus, quail, ostrich, kite, moohan, kituo, mayll, emu.
Quincey KoziolQuincey Koziol
a6bfa0a0aec[svn-r29028] Description: When SWMR writes are enabled, correct record update algorithm to indicate to parent node when a child node that was "only" modified was also "shadowed", so that parent node can update itself (since the address of its child node will move when it is shadowed). Re-enable v2 B-tree SWMR testing. Tested on: MacOSX/64 10.11.3 (amazon) w/serial & parallel (h5committest not required on this branch)
Dana RobinsonDana Robinson
d8186e3871b[svn-r29024] Merge of r29023 from trunk. Fixes typos in configure that prevent using symbols flags (e.g.: -g). Tested on: Local linux VM
Dana RobinsonDana Robinson
61ab7b8bf3f[svn-r29016] Merge of r28936, 28949, 28960-29009 from trunk. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial w/ Fortran and C++ autotools parallel (MPICH 3.1.4) w/ Fortran CMake serial (3.3.2, via cmakehdf5)
Vailin ChoiVailin Choi
821ce6874d9[svn-r29014] h5format_convert(): fix to downgrade superblock version and persistent file space so 1.8 library can open/read the file. Tested on ostrich, kituo, platypus, moohan, quail, emu. More tests will be added later.
Dana RobinsonDana Robinson
5733dbc4adc[svn-r28988] Merge of r28986 from trunk (H5_DLLVAR H5AC_dxpl_id). Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial and parallel
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