[svn-r20132] Purpose: Fixing Bug 2092 - h5dump does not display index for a datasetDescription:
improve the test case from previous checkin r20108, which also display
dataset via region reference.
Previous Log:
h5dump skip displaying array indices every certain number when the
array type dataset is relatively big. The certain number varies
according to the size of each array.
This checkin fix the skipping array indices problem. This fix also
...
[svn-r20124] Bug fix (ID: 519) The content of bin/config_para_ibm_sp.sh has been added to release_docs/INSTALL_parallel long ago. Just got around to remove it.Tested: no need since nothing refer to config_para_ibm_sp.sh except MANIFEST.
Ran bin/chkmanifest.
[svn-r20121] Bug 1586 - the datatype handler created with H5Tencode/decode had the reference count 0. I fixed it by changing the APP_REF parameter of H5I_register from FALSE to TRUE and added a test case in dtypes.c. Tested on jam, heiwa, and amani.
[svn-r20108] Purpose: Fixing Bug 2092 - h5dump does not display index for a datasetDescription:
h5dump skip displaying array indices every certain number when the
array type dataset is relatively big. The certain number varies
according to the size of each array.
This checkin fix the skipping array indices problem. This fix also
correct indentation of the dataset data output.
Tested:
jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), te...
[svn-r20103] Purpose: Change to use HDxxx macros.Description:
Originally this started for fixing incorrect pointer usage. But that got
fixed through coverity merge. So this is mainly changing to use HDxxx
macros and clean up some related code.
Tested:
jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE)
[svn-r20065] Description: Bring changes from Coverity branch to trunk:r19975:
Fixed potential mem leak at H5O_attr_open_by_name
r19980:
Fix coverity issue 792.
Free tmp_env_prefix in H5Lexternal.c line 365 if it is not NULL but its contents are 0 when it goes out of scope.
r20039:
Eliminate warnings about nested extern and implicit declarations of parallel_print and address Coverity defects 712-781 by #including h5tools_utils.h in h5diff_array.c, h5diff_attr.c,...
[svn-r20064] Purpose: Implement external file cacheDescription:
Implements a cache of files opened through external links. Adds the public
functions H5Pset_elink_file_cache_size(), H5Pget_elink_file_cache_size(), and
H5Frelease_file_cache().
Tested: jam, amani, heiwa (h5committest), fedora 64.
[svn-r20063] Merge changes from trunk from revision 19519 to 20062 into open_file_pool branch. No testing needed as the branch is currently identical to the trunk.
[svn-r20061] Description: Bring changes from Coverity branch to trunk:r19930:
Fix memory leaks involving VL attributes in h5repack and h5diff. The buffers in
copy_attr and diff_attr were not checked for the presence of a vlen before being
freed, and vlen storage was never reclaimed. Added checks and calls to
H5D_vlen_reclaim().
r19933:
Purpose: Fix memory leak in H5L_move_cb()
Description: H5L_move_cb copied the source link using H5O_msg_copy() but freed
it m...
[svn-r20058] Changed Linux system to use mpicc as the default parallel C compiler. mpif90 is already the default parallel Fortran if mpicc is the C compiler.Tested: Jam (serial and parallel). No need for committest since this change is
limited to Linux system.
[svn-r20052] Description: Clean up Coverity warnings, and fix some style issues:r19735:
Fix for memory leak in test/mf found by valgrind.
r19736:
Fix memory leak in h5repack. The buffer in copy_objects, when copying the
entire dataset at once, was not checked for the presence of a vlen, and vlen
storage was never reclaimed. Added check and call to H5D_vlen_reclaim().
r19772:
Change H5assert() to
if (H5T_VLEN != src->shared->type || H5T_VLEN != dst->shared->type)
...
[svn-r20050] Description: Bring sec2 and log VFDs back into agreement. Correct several compiler warnings. Also add some additional statistics to the log VFD and promote the parameter for H5Pset_fapl_log from 'unsigned' to 'unsigned long long'.Tested on:
Mac OS X/32 10.6.6 (amazon) w/debug & production
FreeBSD/32 8.2 (loyalty) w/debug
FreeBSD/64 8.2 (freedom) w/debug
[svn-r20048] Description: Bring Coverity changes back to trunk:r19733:
Fix memory leak in h5perf_serial. Global buffer "buffer2" was allocated at the
beginning of do_sio() but never freed. Added call to free() at end of do_sio().
r19734:
Fix memory leak in iopipe. Buffer "the_data" was allocated at the beginning of
main() but never freed. Added call to free() at end of main().
Tested on:
Coverity branch in daily tests & Mac
[svn-r20029] Purpose: Fix bug 2131Description:
When using the scale-offset filter with floating point data or fill values, big
endian machines would save some metadata in the wrong byte order. This caused
such datasets to yield incorrect data when read on little endian machines.
Fixed the scale-offset filter to always save this metadata in the right byte order (i.e. little endian).
Tested: jam, amani, heiwa (h5committedt); fe...
[svn-r20027] I added some test cases for H5Oset(get)_comment and H5Oset(get)_comment_by_name. It's related to bug 2130.Tested on jam, amani, and heiwa.
[svn-r20019] Bug 2019: h5perf or h5perf_serial is removed twice. Some systems like AIX do not like it as it may get into a racing condition when "gmake -j N" is used-- two "rm" commands were trying to remove the same file.Solution:
Rearranged the Makefile.am so that h5perf or h5perf_serial are built only
once, that is through bin_PROGRAMS only.
Bug 2135: h5perf_serial is not installed in --enable-parallel build.
It was because in parallel build, h5perf_serial is not was not in the
bin_PROGRAMS list but it was still being built and tested.
Solution:
Rearranged the Makefile.am code so that h5perf_serial is insta...
[svn-r20005] Purpose: Clean up tool code. Remove "h5test.h" from tool code. Currently only in h5repack.Tested:
jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), linew (solaris-BE)
[svn-r19998] I changed the previous commit from FLOAT to DOUBLE again because Neil prefers to it for fill value test. I updated the data files, too.Tested on linew and jam.
[svn-r19989] Description: Finish implementing time tracking for read & seek operations in the 'log' VFD. Also clean up code and track total time during all read/write/seek operations.Tested on:
Mac OS X/32 10.6.6 (amazon) w/debug & production
(too minor to require h5committest)
[svn-r19982] I changed the previous commit from DOUBLE to FLOAT because the bug (2131) happens to FLOAT only. I updated the data files, too.Tested on linew and jam.
[svn-r19978] Patched in a temporary fix so that: When $HDF5ExpressTest is NOT set or when it is set to 1 or 0, it does not skip test. When $HDF5ExpressTest is set other than values above, it may skip tests. The following message is printed: Test skipped when some tests are really skipped.This is a temporary patch so that v186 can be tested. A more permanent fix
is needed, later.
Tested: h5committest.
[svn-r19977] Bug 2131 - I added a test case for integer data. I also skipped the test case for double data because it still fails.Tested on jam and linew.
[svn-r19972] I added a test case for dataset with scale-offset filter into cross_read.c and updated the data files from BE, LE, and VMS.Tested on jam and linew.
Quincey Koziol
Jonathan Kim
Albert Cheng
Raymond Lu
Frank Baker
Neil Fortner
Allen Byrne
Elena Pourmal
Peter Cao