Author Commit Message Commit Date Dana Robinson 1966edc6a5b Updated export alignments tool to use new error macros.
Minor change to export reads tool. 08 Jul 2011 Dana Robinson 78fa645e21a Fixed bug in export reads tool. 08 Jul 2011 Dana Robinson 2560f889144 Updated export reads to use new error handling.
Export reads is having a getopt parse issue. Not sure what that is, but it keeps jumping to usage.
Minor changes to other files. 07 Jul 2011 Dana Robinson 4eb3c3827ef Updated preparse SAM tool to be more robust. 07 Jul 2011 Dana Robinson a4da996f5b2 Still working on alignments test. 28 Jun 2011 Dana Robinson 3d4a4e877e3 Added a shortcut so that no work is done when indexing empty collections. 28 Jun 2011 Dana Robinson 6562d7d8666 Changed "storage" to "collection" in a few reads names. 28 Jun 2011 Dana Robinson 3dd923d80b3 Partially improved alignments test. 28 Jun 2011 Dana Robinson 67e324917da Partially improved alignments test. 27 Jun 2011 Dana Robinson ae3d2649c25 Fixed a few remaining gcc issues. Updated Makefile.am to also run test_alignments. 27 Jun 2011 Dana Robinson 916e0a8295e - Fixed more gcc warnings.
- Added int check macros for <= and >=. 27 Jun 2011 Dana Robinson 989604e9c62 Fixed some warnings from gcc. 27 Jun 2011 Dana Robinson 06d512f12a8 Minor change 27 Jun 2011 Dana Robinson 02b9f779e1d - Updated return codes in tools.
- Added error checking to preparse SAM tool.
- Cleaned out alignments test tool. 27 Jun 2011 Dana Robinson 04abb04ea75 Rest of code converted to new error macros. 27 Jun 2011 Dana Robinson 08917752fbe Updated some BioHDF files to use the new error macros. 26 Jun 2011 Dana Robinson 89ef79aad35 Set the libbiohdf and test_vectors projects to ignore warning 4005.
This arises due to the CMake binaries #defining _HDF5USEDLL_ which is required to use the HDF5 dlls. Since this is not defined in some of our binaries, I'm leaving it #defined and ignoring the warnings. Since it's just a flag, this does no harm. 24 Jun 2011 Dana Robinson 14afc3e88b2 - Replaced _HDF5USEDLL_ in VS projects. It's easier to ignore the redefinition warnings than to deal with the missing #define.
- Reworkd vector and vpart files to use new error macros throughout.
- Updated error macros. 24 Jun 2011 Dana Robinson 15a4671b80a Untabified files. 24 Jun 2011 Dana Robinson a0143700a99 All tests except alignments updated to new test macros and pass on Windows. 23 Jun 2011 Dana Robinson 50941973737 Updated test_reads to use the CHECK_INT macro. 23 Jun 2011 Dana Robinson efb1bea9eb3 - Removed the "use DLL" define since that is defined in CMake builds now.
- Added new macros
- test_groups now uses the new error macros. 23 Jun 2011 Dana Robinson 78c1aeebe98 Marked up test_reads with new error macros. 22 Jun 2011 Dana Robinson ed96a8fb8d3 Added some basic test macros.
The old experimental test macro in test_reads.c was renamed as well, though this code will be replaced with the new macros. 22 Jun 2011 Dana Robinson 9d5f2c50d33 Removed the Lua files since I'm not using that at this time. 22 Jun 2011 Dana Robinson 956f849cdc1 Added a note describing autoreconf usage. 14 Jun 2011 Dana Robinson 6f9ca3a6116 Removed another generated file. Restored (empty) m4 directory. 14 Jun 2011 Dana Robinson 959fa04f4b1 Removed generated autotools files. 14 Jun 2011 Dana Robinson 345c5f77ef7 Sync timestamps on a few other configuration files 13 Jun 2011 Dana Robinson 6a18ca32ef9 Bringing all configure timestamps into sync to fix configure issues 13 Jun 2011 Dana Robinson 8b3b08dcce6 BioHDF header files now installed by make install. 12 Jun 2011 Dana Robinson f4c2b90ae7b Added m4 directory with libtool stuff (generated on Ubuntu). Updated some macros in configure.ac and top-level Makefile.am 12 Jun 2011 Dana Robinson cecf44d92bc Updated Makefile.am to include reads test program. 12 Jun 2011 Dana Robinson f60ff8510d4 - Fixed the reads iterators, which had been left broken from earlier work.
- Removed C program calls from testing shell script. This will now be done automatically via make check.
- Reworked the reads test program.
- Minor changes to the other test programs. 12 Jun 2011 Dana Robinson ac972453c11 Updated test Makefile.am to accommodate vector test program, fixed a minor warning from gcc and added code to remove the test file. 07 Jun 2011 Dana Robinson 8c05c0001f1 Finished updating vector test. 07 Jun 2011 Dana Robinson 6fdb3d85b42 Removed unnecessary vector and vpart iterator functionality.
When we use vectors and vparts internally, we always need to know the HDF5 index so these functions are not particularly useful. 07 Jun 2011 Dana Robinson 9bef5ba891f Commit of current vector test and fixed an enumerator bug in the vector code. 07 Jun 2011 Dana Robinson 8983810dd52 About half done with vector test update. 07 Jun 2011 Dana Robinson 4668189ae2a Updated solution to accommodate vectors test. 07 Jun 2011 Dana Robinson 269d2f92056 Rename 07 Jun 2011 Dana Robinson 2e09887b8d2 Rename 07 Jun 2011 Dana Robinson 534b7341eab Added a few explanatory comments to the FAIL cleanup. 07 Jun 2011 Dana Robinson c289c4cca86 Updated Makefile.am and re-ran autoreconf so updated groups test passes. 07 Jun 2011 Dana Robinson 0f2400c8bb6 Fixed up the groups test and VS project. Now it doesn't require user observation to ensure it worked and it matches the source code. 07 Jun 2011 Dana Robinson 16d8732ac33 Updated test projects on Windows. 07 Jun 2011 Dana Robinson f0208272f5e Added VS2008 project for testing BioHDF files. 07 Jun 2011 Dana Robinson 94462c69246 Updated Makefile.am to handle basic tests (which need some rework) and re-ran autoreconf. 07 Jun 2011 Dana Robinson 58c9d5033ab Block commented out sketchy tests while I move them into make check and fix things. 07 Jun 2011 Dana Robinson 60e449392e7 Moved test files to a separate directory. 07 Jun 2011 ← Prev Next → require('plugin/commitgraph/network').applyCommits([{id: '1966edc6a5b75ccf851e0e8dc09a4452277b2bf3', href: '/projects/BIOHDF/repos/biohdf/commits/1966edc6a5b75ccf851e0e8dc09a4452277b2bf3',parents: [{ id: '78fa645e21a58e90b5b3908425678c3bd0b91bd8' }]},{id: '78fa645e21a58e90b5b3908425678c3bd0b91bd8', href: '/projects/BIOHDF/repos/biohdf/commits/78fa645e21a58e90b5b3908425678c3bd0b91bd8',parents: 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