Author Commit Message Commit Date Dana Robinson 9a46ec28038 Fixed some really long comment lines that look annoying in vim. 07 Jun 2011 Dana Robinson a0a54a17653 Added executable properties to the main test script. 07 Jun 2011 Dana Robinson 75c01151dbf Condensed some whitespace. 07 Jun 2011 Dana Robinson 013911eb7ab - Updated dates to June 2011
- Changed a small section of the UG to courier font so -L and -I are more easily read. 07 Jun 2011 Dana Robinson 3239223ee73 - Fixed symlink errors in config directory. Actual files are now stored.
- Removed unneeded reconfigure script.
- Re-ran autotools to create scripts.
- Documented autotools warnings in a README.txt file in config/
NOTE: A few of these changes were committed in the prior commit or two
due to an issue where some symlinks were accidentally committed. 07 Jun 2011 Dana Robinson 2070f7fa266 Replaced deleted symlinks with actual files. 07 Jun 2011 Dana Robinson b5542396711 Deleted incorrectly committed symlinks. 07 Jun 2011 Dana Robinson 8f9fdbddbe5 Fixed format string errors (wasn't using C99 format strings). 24 May 2011 Dana Robinson 4def75b4f47 Updated release docs with testing and building information. 16 May 2011 Dana Robinson 5b8b2a0ce13 Fixed test_biohdf.sh script to handle new source directories 16 May 2011 Dana Robinson 0b4b3c513c3 Autotools approaching functionality... 16 May 2011 Dana Robinson 246149c911a Added test/ makefiles 16 May 2011 Dana Robinson 12f2293652d Removed unused variables from alignments test program. 16 May 2011 Dana Robinson 23a66589af5 Updated test files to use C99 integer types and int as bool. 16 May 2011 Dana Robinson 7e48802f58f More changes to the autotools code 16 May 2011 Dana Robinson dab6e26a0c6 Minor rename 16 May 2011 Dana Robinson fa861925f2f Added reconfigure script and removed old "help" file. 15 May 2011 Dana Robinson b6919731960 Moved doxygen config file. 15 May 2011 Dana Robinson d668b2e413c Code reorganization and dead code removal. 15 May 2011 Dana Robinson 1360af7b7b4 Updated release.txt for 0.4a release. 15 May 2011 Dana Robinson 2588f82a13f Removed empty documents. 15 May 2011 Dana Robinson 604f27c1283 Documentation update (not finished yet). 15 May 2011 Dana Robinson 3df5e3461dc moved the bonus configure files to a config/ directory 15 May 2011 Dana Robinson 1b2aa240ff7 Still working on autotools and it still doesn't build tools properly 04 May 2011 Dana Robinson e13e6eb57cd Replaced biohdf_bool with int, TRUE with 1 and FALSE with 0.
There is no real good solution to booleans in C aside from int. The C99 bool is madness and BioHDF doesn't need to add another boolean enum to the world. 04 May 2011 Dana Robinson 6d2d71ca602 Added RELEASE.txt document. 04 May 2011 Dana Robinson ffdbafa7728 - Changed the static library name on Windows back to libbiohdf_static.lib.
- Added a test statically linked tool to work out HDF5 static linkage issues. 29 Apr 2011 Dana Robinson 4084e3d7085 Attempting to add a static library for the nth time.
This time, even if it doesn't work for the tools due to an underlying HDF5 issue, I'll leave it in place and make it disabled by default. 29 Apr 2011 Dana Robinson 41cba061066 Removed "INDEXING" printf output from import tool. 29 Apr 2011 Dana Robinson 03315cfc419 - Changed biohdf_int64 et al. types to C99-compliant types.
- Moved C99 integer header files to the Windows source directory. 29 Apr 2011 Dana Robinson 758b330ea9e - Fixed Visual Studio project file and path locations.
- #includes for BSD getopt on Win32 are a bit hacky but functional. Will be fixed when the config.h #defines are fully integrated. 29 Apr 2011 Dana Robinson bb1897c7a1c Added lua for later testing use. 29 Apr 2011 Dana Robinson 991367755ab Autotools appear to build biohdf correctly, though the code still needs some work. 26 Apr 2011 Dana Robinson eec00b47036 Removed some allele frequency references that won't compiler. Additonal autotools work (almost done?) 26 Apr 2011 Dana Robinson a77b850b71c Added empty lines to end of header files to quiet gcc warnings. 26 Apr 2011 Dana Robinson bbc3161ff69 More autotools work. Still broken. 26 Apr 2011 Dana Robinson 29a6ff3acb2 Wrapped getopt processing #include <unistd.h> with HAVE_UNISTD_H. 26 Apr 2011 Dana Robinson c7117b4a005 Fixed messed up biohdf.h. 26 Apr 2011 Dana Robinson 140f9599629 Checkin of current (still broken) autotools code. 26 Apr 2011 Dana Robinson 16eadd93d9a Changed header files for getopt(). 26 Apr 2011 Dana Robinson 4e79e5fc41b Fixed a bunch of issues in the tools makefile 26 Apr 2011 Dana Robinson 99b94d4ec1e - Removed BSD getopt header #include.
- Replaced with #includes of unistd.h and getopt.h. Will wrap with config flag stuff later. 26 Apr 2011 Dana Robinson 017f0685ab1 Moved BSD getopt files to Windows source directory 26 Apr 2011 Dana Robinson 530703b8849 Moved remaining tool code to tools/ and updated Makefile.am. 26 Apr 2011 Dana Robinson 39f71578a40 Added helper file for autotools :) 26 Apr 2011 Dana Robinson 66dbfc8e4d9 Minor autotools file updates. Everything is still broken. 26 Apr 2011 Dana Robinson b6cc5755d3f Removed old Visual Studio folder 26 Apr 2011 Dana Robinson fb96f843b66 Moved Visual Studio code to windows/ directory 26 Apr 2011 Dana Robinson 63756809f4e Moved tools code to tools/ folder. 26 Apr 2011 Dana Robinson a4d1321bc54 Moved test files to test/ directory 26 Apr 2011 ← Prev Next → require('plugin/commitgraph/network').applyCommits([{id: '9a46ec280386b7928985df0a4b84b903951b1f70', href: '/projects/BIOHDF/repos/biohdf/commits/9a46ec280386b7928985df0a4b84b903951b1f70',parents: [{ id: 'a0a54a17653778f8cd0838db697afac2778c4953' }]},{id: 'a0a54a17653778f8cd0838db697afac2778c4953', href: '/projects/BIOHDF/repos/biohdf/commits/a0a54a17653778f8cd0838db697afac2778c4953',parents: [{ id: '75c01151dbfd1d09c9c9d3d5344949a8695072a1' }]},{id: '75c01151dbfd1d09c9c9d3d5344949a8695072a1', href: '/projects/BIOHDF/repos/biohdf/commits/75c01151dbfd1d09c9c9d3d5344949a8695072a1',parents: [{ id: 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