ParallelIO

Added a better handler for NAG compiler -mismatch_all

The NAG compiler needs the flag -mismatch_all in order to compile
PIO. Previously, we used target_compile_options, but that does not
seem to actually work. I changed it to use CMAKE_Fortran_FLAGS
instead, and had to update every CMakeLists.txt file in a directory
with fortran code.

Test suite: Build on Hobart with Nag - worked
Test baseline:
Test namelist changes:
Test status: [bit for bit, roundoff, climate changing]

Fixes: [CIME Github issue #]

Code review: