[svn-r15825] Description: Fix various problems with a the core & sec2 VFDs. Improve the h5_get_file_size() routine to handle files created with
VFDs that use multiple files.
Tested on:
Mac OS X/32 10.5.5 (amazon) in debug mode
Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Li...
[svn-r15822] Bug fix: #1090The custom rules for installing h5cc, h5fc, and the fortran modules in fortran
and in hl/fortran don't use $(DESTDIR). Added it to all those rules.
Tested: kagiso both serial and parallel with fortran and cxx enabled.
Tested by:
make install
make DESTDIR=/tmp/acheng install
diff -r /tmp/acheng/.../hdf5 hdf5
[svn-r15819] Modifications for bug #1253: 1. Fixed segmentation fault in print_group_info() 2. Call print_statistics() in main() when objects/links are successfully traversed; otherwise, return warning message. line, and those below, will be ignored--M h5stat/h5stat.c
[svn-r15818] Fixed error in metadata cache configuration validation code uncovered when updating documentation for "cork the cache" and flash cache size increment code.Tested: Serial on Phoenix
Parallel on Kagiso
Serial on Linew
[svn-r15816] Purpose: Update h5ls test scriptDescription:
The general h5ls test script was recently updated. This checkin brings those changes to Windows
Also add freespace & mf to general test script, since I forgot in the last checkin
Tested:
VS2005 on WinXP
[svn-r15815] Purpose: Add new source code and tests to WindowsDescription:
Many new source files were added from the freespace branch. This checkin adds the code to Windows as well.
Note: Some tests are still failing on Windows, but this checkin brings us closer to fixing them. In particular, freespace test fails on compile (Quincey is working on it), and the DLL links test fails at runtime (I'll look into it)
Tested:
VS2005 on WinXP
[svn-r15804] Purpose: Add option to h5ls to enable external link traversal.Description: Added -E option to h5ls. When set, this alows h5ls to enter
external files (currently only through an external link). The -r option by
itself will no longer allow h5ls to traverse external links.
Tested: kagiso, linew, smirom (h5committest)
[svn-r15802] Description: Skip some file free space tests that deal with aligned allocations when using the stdio VFD, which has its own allocation process that drops the unaligned fragments instead of tracking them with the free space manager.Tested on:
Mac OS X/32 10.5.5 (amazon) w/stdio VFD
[svn-r15800] Description: Bring file free space branch changes through r15795 into trunk, which includes a fair bit of code cleanup & rearrangement along with a couple of bug fixes also.Tested on:
Mac OS X/32 10.5.5 (amazon) in debug mode
Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
...
[svn-r15798] Description: Change H5Tcommit() call to H5Tcommit2() call, so that library builds with the default API set to v16 work.Tested on:
Linux/64 2.4 (smirom) w/default API set to v16
[svn-r15796] Purpose: Close bug #1322Description: Fixes a possible datatype id leak that could occur during compound
datatype conversion, or more precisely, when unregistering those conversions.
Datatype ids normally registered by the library are no longer visible to the
application via H5Fget_obj_ids and H5Fget_obj_count.
Tested: kagiso, linew, smirom (h5committest)
[svn-r15792] Bug fix. When detecting the user requested filters, the "all" option was not taken in consideration when printing the compression ratioTested: windows, linux
[svn-r15789] Purpose: Add new source file, H5EAsblock.c, to WindowsDescription:
The source file H5EAsblock.c was recently added to svn. This checkin also adds it into our Windows project files.
Note that it hasn't been included in the Visual Studio .NET projects. We are discontinuing our support for Visual Studio .NET in the trunk so we can use C99 features not available in Visual Studio .NET. From this point forward, the Visual Studio .NET projects won't ...
[svn-r15762] Changes for bug #1247 so that the user can specify the driver to use when opening the external linked target file. 1. Two new public routines are added to H5Plapl.c as well as "del/copy/close" callbacks for the property itself. 2. Modify H5L_extern_traverse() to use the fapl set via H5Pset_elink_fapl() and retrieve via H5Pget_elink_fapl(). 3. Add 3 tests to links.c to verify H5Pse...Also fix the compiler warning for the "if condition" in
H5_build_extpath() of H5system.c.
[svn-r15757] Bug #1312 Solution: Check for the existence of chunks before pruning them (an assertion was triggered when attempting to do so)Tested: windows , linux, solaris
[svn-r15755] Description: Fix some minor problems w/extensible array super blocks and extend tests.Tested on:
Mac OS X/32 10.5.5 (amazon) in debug mode
Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
...
[svn-r15746] Description: Add support for extensible array "super block".Tested on:
Mac OS X/32 10.5.5 (amazon) in debug mode
Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
...
[svn-r15741] Description: Extend testing for data block reachable from the index block.Tested on:
Mac OS X/32 10.5.5 (amazon) in debug mode
Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
...
[svn-r15738] Description: Correct a couple of minor bugs for handling data blocks from index block and extend tests further.Tested on:
Mac OS X/32 10.5.5 (amazon) in debug mode
Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
...
[svn-r15723] Purpose: Add h5import test to WindowsDescription:
Add a new test for h5import to check for alignment. Also fix the failing h5repack test, now that ublock has been added to svn.
Tested
VS2005 on WinXP
[svn-r15721] Added a file with user block data to be used by the h5repack windows shell script only Note: for the unix shell script this file is not used
[svn-r15704] I changed the return values of H5Fget_obj_ids and H5Fget_obj_count to ssize_t and modified C++ and Fortran API functions. This is for bug #1245. Tested on smirom, linew, and kagiso.
[svn-r15703] Description: Further progress on extensible array implementation - add support for more data blocks from index block.Tested on:
Mac OS X/32 10.5.4 (amazon) in debug mode
Mac OS X/32 10.5.4 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
...
[svn-r15701] Description: Remove some unused variables.Tested on:
Mac OS X/32 10.5.4 (amazon) in debug mode
Mac OS X/32 10.5.4 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
...
[svn-r15699] Bug fix #1281 The TEXTFPE was described in the usage (read floats in scientific notation) but was not implemeneted. Solution: remove TEXTFPE from the help system and have the TEXTFPE input type do the same thing as TEXTPF currently does to support backwards compatibility (the format read for both TEXTFPE and TEXTPF is %f) added a testtested: windows, linux
[svn-r15692] Description:Added the optional 'mounted' variable to H5Gget_info_by_idx_f/H5Gget_info_f/H5Gget_info_by_name_f to see that it passes the correct values.
[svn-r15687] Description:Fixed
nh5sget_select_hyper_blocklist_c
nh5sget_select_elem_pointlist_
for bug 1319. by transposing arrays for C-FORTRAN convention.
[svn-r15682] Purpose: fix bug 1298Description: The optimized "subset" compound conversion function would
improperly copy the "blank" space at the end of compound types. Modified
H5T_conv_struct_init to detect when the subset type has extra space at the end,
and calculate the size of the data that should be copied into the conversion
buffer for each element. Changes to the functions that implement these
conversions.
Tested: k...
Quincey Koziol
Albert Cheng
Vailin Choi
John Mainzer
Scott Wegner
Pedro Vicente Nunes
Neil Fortner
Christian Chilan
Scot Breitenfeld
Private HDF
Raymond Lu