[svn-r19313] Description: Clean up a few compiler warnings and style issues in/near recent changes.Tested on:
Mac OS X/32 10.6.4 (amazon) w/debug & production
(too minor to require h5committest)
[svn-r19312] Description: Bump optimization down for Intel 10.* compilers, due to apparent bad cod e generation.Tested on:
Linux/64 2.6 (cobalt) w/debug & production & Intel 11.1 compilers
(h5committest not appropriate)
[svn-r19309] Description: Bring revisions from Coverity branch back to trunk:r19191:
Fix coverity items 104 and 105. Added calls to H5HF_sect_indirect_free to
H5HF_sect_indirect_reduce and H5HF_sect_indirect_reduce_row if there is an errorbefore "peer_sect" is linked into the main free space structure via its direct
sections. Also delayed call to H5HF_sect_indirect_first to prevent peer_sect
from being left in an inconsistent state.
r19268:
Added fix to disallow exte...
[svn-r19304] bug 1678: temporary fix.Description: aix -q32 default to a memory limit that some HDF5 tests would
fail in malloc.
Solution:
Temporary hardset
RUNSERIAL=${RUNSERIAL="env LDR_CNTRL=MAXDATA=0x20000000@DSA"}
to bypass this problem until the test programs are fixed. Though -q64 binary
has a higher default memory limit and does not need this patch, it is applied
the same for the sake of simplicity since it is a temporary...
[svn-r19297] Description: Whack a few more memory errors exposed by valgrind. Make the debugging dump output a little bit prettier.
Tested on:
Mac OS X/32 10.6.4 (amazon) w/debug
(h5committest forthcoming)
[svn-r19293] bug 1678: temporary fix.Description: aix -q32 default to a memory limit that some HDF5 tests would
fail in malloc.
Solution:
Temporary hardset
RUNSERIAL=${RUNSERIAL="env LDR_CNTRL=MAXDATA=0x20000000@DSA"}
to bypass this problem until the test programs are fixed. Though -q64 binary
has a higher default memory limit and does not need this patch, it is applied
the same for the sake of simplicity since it is a temporary...
[svn-r19292] Description: Merge r19290 & r19291 from 1.8 branch to trunk:r19290:
Correct another error in metadata accumulator dirty region calculations
(this time with a corner case when freeing data in the file).
r19291:
Avoid getting object information for soft/external links if we aren't
going to traverse across the link itself.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/...
[svn-r19288] Bug 1934 - I added support of all data types for H5Tget_order. I added a new byte order H5T_ORDER_MIXED specifically for compound types and its derived types. They report mixed orders if they have members of different orders.There is no change to configure.in, config, and Makefile.am in the top directory. They have
some property changes when I merged the code from 1.8.
Tested on jam. I tested the same change for 1.8 with h5committest.
[svn-r19272] Description: Close out various resource leaks and usages of uninitialized memory that were flagged by valgrind. [There's still some more valgrind warnings, but it's better now... :-/ ] Also clean up warnings and code formatting.
Tested on:
Mac OS X/32 10.6.4 (amazon) w/debug & valgrind
(h5committest forthcoming)
[svn-r19260] Change Cmake to allow a local zlib header to be used in H5Zdelate module. Corrected use of "SKIP" message in cmake. Corrections to cmake configuration files (for cmake external projects).Community suggested changes.
Tested: local linux
[svn-r19252] Description: Bring Coverity changes from branch to trunk:r19161:
Fixed the part for matching the subset info with dataset
r19189:
BZ1646: h5dump does not check number of dimensions for subsetting parameters against the dataset
Changed subset_t structure from holding hsize_t pointers to holding new subset_d pointers, which hold the original hsize_t pointer + len. this len is then checked against dataset ndims in the handle_dataset function of h5dump...
[svn-r19251] New feature(bug #1934): I made H5Tset_order support all data types with some restictions: 1. For enum type, members shouldn't be defined yet. 2. H5T_ORDER_NONE only works for reference and fixed-length string. 3. For opaque type, the order will be ignored. 4. For compound type, all restrictions above apply to the members.I'll change H5Tget_order and do another commit.
There is no change to configure.in, config, and Makefile.am. There is some property change for
these files when I did a merge from 1.8.
Tested on jam. But I tested the 1.8 on heiwa, and amani.
[svn-r19247] Description: Bring r19246 from Coverity branch to trunk: Improve metadata "accumulator" for files to track the dirty region within
the accumulator data. This allows the accumulator to drop clean data and
reduces the number of I/O operations when it is dirtied.
This is progress toward Bz#1142 - speeding up the fheap test (which it
doesn't help much, actually, but it does help other aspects of file I/O).
Tested on:
FreeBSD/32 6.3 (du...
[svn-r19242] Description: Add in override for testing timeout alarm to allow "HDF5_ALARM_SECONDS" environment variable to change the timeout value from the default value.Tested on:
Mac OS X/32 10.6.4 (amazon) w/debug & production
(Too minor to require h5committest)
[svn-r19237] Description: Clean up misc. compiler warnings.Tested on:
FreeBSD/32 6.3 (duty) in debug mode
Mac OS X/32 10.6.4 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
Mac OS X/32 10.6.4 (amazon) w/parallel, in debug mode
[svn-r19236] Description: Clean up compiler warnings and misc. style issues with new internal tagged entry code.Tested on:
FreeBSD/32 6.3 (duty) in debug mode
Mac OS X/32 10.6.4 (amazon) in debug mode
Mac OS X/32 10.6.4 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
Mac OS X/32 10.6.4 (amazon) w/parallel, in debug mode
[svn-r19235] Description: Bring r19234 from the 1.8 branch to the trunk: Initialize loop variable that caused failures in certain circumstances.
Also clean up compiler warnings and release MPI datatype.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-a...
[svn-r19230] Reset alarm_seconds back to 20 minutes.Description:
honest3 v1.8 failed in parallel test. It got stuck in the same
testpar/testphdf5 subtest (cbhsssdrpio). This is an old problem.
Upon closer inspection, the testphdf5, when terminated, had clocked
up 1hr 9min 46 sec wall clock time. Honest1 system also sent a message
that an mpi process has used up 30+ CPU minutes which exceeded their login
node cpu time limit and they killed the...
[svn-r19228] File read/write happens at configure time, so moved windows specific copy from test macro to where the expected file is copied.Tested: windows
[svn-r19225] Moved subfolder checked outside of OPTION command. If folder doesn't exists, there is no reason to have option enabled.Tested: local linux
[svn-r19222] Move hl fortran ADD_SUBDIRECTORY to right after fortran ADD_SUBDIRECTORY. This fixes a problem with compiler generated files not including target module directory on some linux machines. Corrected minor format/location of commands.Tested: local linux
[svn-r19217] Bug 1986, error1.It is an error to use the condition H5_HAVE_FSEEK64 to control the definition
of HDlseek. It caused errors in AIX where lseek64 is available.
Replaced it with H5_HAVE_LSEEK64. Also added the missing HDstrcasecmp macro.
Tested: AIX using default and --disable-largefile.
[svn-r19214] Test for compare of output text to expected needed to account for windows line endings.Moved ADD_TEST commands to macro.
Tested: local linux, windows
[svn-r19205] Bug 1917: post cleanup.fseek64 was used to support large file access for the STDIO driver back in
version 1.2.2 in year 2000. Some how it was not included in version 1.4.0.
Now, fseeko64 is used to support large file. There is no more need for fseek64
which is not a standard call. Removed its presence from configure and related
files.
Tested: jam for configure only.
[svn-r19202] [BZ1953]implementation for the proposed changes suggested by the "h5dump_output_option" RFC. This required that the region reference code be duplicated and reduced to allow the do_bin_output() function to understand region references. The container type-id also needed to be propagated into the do_bin_output() function and functions referenced (render_bin_output*).Existing tests tested the binary function, so only one test was added to test the region reference generated file.
Tested: local linux
[svn-r19201] Added tests that subdirectories exist before using ADD_SUBDIRECTORY CMake command Added cache set command for default install prefixTested: local linux
[svn-r19188] Bug fix: ID 1917The STDIO only checked for fseeko and incorrectly assumed it can support file
sizes larger than 32bits. Fixed it by making to use fseeko64 if supported, else
use fseeko. To simplify the code, assume fseeko which is a POSIX function must
be supported. Therefore, fseek is not used at all.
(Note: the above applies to Unix-like system. The Windows platform has
hardcoding using Windows functions w...
[svn-r19185] Bug fix: ID 1917In some machine (Linux), when --disable-largefile is used, it claims it has
fseeko64 but off64_t is NOT supported. Moved the test of fseeko64 and ftello64
to where fseek64 is so that they are tested only if off64_t is supported.
Tested: h5committested.
Quincey Koziol
Allen Byrne
Albert Cheng
Raymond Lu