[svn-r18571] Description: Bring r18542 from metadata journaling "merging" branch to trunk: Bring new object header pin/unpin & protect/unprotect routines and
split-out object header chunk proxy changes from metadata_journaling branch to
"merging" branch, along with some other minor tweaks to clean up compiler
warnings, etc.
Also: clean up chunk protect/unprotect calls when allocating or freeing
space in a chunk, optimize metadata accumulator code to avoid some re-reading
of inform...
[svn-r18567] Purpose: Fix error in call to memmove() in H5B_remove_helper. This error was only reproducible through the use of electric fence.Tested: Fedora (too minor for h5committest)
[svn-r18565] Description: Minor whitespace and compiler warning cleanupsTested on:
Mac OS X/32 10.6.3 (amazon) w/debug
(too minor to require h5committest)
[svn-r18551] Description:In order to compile stand-alone Fortran wrappers the following files need to be installed via make install:
(1) From the source: trunk/fortran/src/H5f90i.h
- defines the character type and includes the file H5f90i_gen.h
(2) From the compiled source: trunk/fortran/src/H5f90i_gen.h
- a generated file at hdf5 compile time relating the C types to the Fortran types for interope...
[svn-r18535] Purpose: Fix bug 1815Description:
Attempting to copy an object with NULL references (all bytes zero) with the
H5O_COPY_EXPAND_REFERENCE_FLAG flag set would cause a failure or an assertion
(depending on whether it was in debug mode). Changed copy routine to detect
NULL references (object and region) and avoid attempting to expand the reference
in this case.
Tested: jam, linew, amani (h5committest)
[svn-r18532] Bug fix: When gcc is used in the AIX platform, it failed to compile tconfig.c because it does not recognize the __int64 type. The ibm-aix has the sizeof __int64=8 cached, as if all compilers supported this type.Solution:
Removed the cached value for the sizeof __int64 so that during
configure, gcc can report it does not support it and not to use
it in the source code.
Tested:
NCSA Blue which is an AIX machine, using gcc or xlc compiler.
(The gcc still have failure but is being fixed as separated bugs.)
[svn-r18516] Bug: PGI v10.2 in Red Storm Qual complained about the H5_IS_API macro with the following message when -Mbounds is used: PGC-S-0053-Illegal use of void type The compiler did not like to treat the literal strings as arrays. The -Mbounds option is used when --disable-production is used.Solution:
Casted all the literal to (char *).
Tested:
h5committest passed (linew is not quite completed yet.)
Red Storm Qual passed with the fixed H5_IS_API macro though it has other
failures later. Will be fixed in another batch.
[svn-r18492] Bug fix: Testlibinfo.sh failed again.Solution:
Removed the const from H5libhdf5_settings definition, again.
Revamp the whole setting so that H5lib_settings.c is compiled
individually, just like H5Tinit.c. Hope this will take care
of the problem once for all.
Tested:
Jam using --disable-shared with --enable and --disable-embedded-libinfo.
Will test this on the AIX platform after commit (cannot run bin/reconfigure
in the AIX platf...
[svn-r18474] Description: Switch back to generating a .h file for the library settings. Also, tart it up a bit to avoid multiple inclusions, etc.Tested on:
Mac OS X/32 10.6.3 (amazon) w/debug & production
FreeBSD/32 6.3 (duty)
[svn-r18469] bug fix: recent changes to the embedded library generation code does not quite work for the AIX system. The strings command of AIX does not display the embedded library information be default.Solution:
Changed the H5libhhdf5_setting[] to be an extern variable. Also removed the
const qualifier so that strings can see the variable data.
Tested:
Blue-print (with embedded-libinfo enabled and disabled).
Also tested in Jam.
[svn-r18460] Description: Fold metadata journaling changes into the trunk: mostly tweaky small stuff, also removed the H5F_t* field from the H5G_entry_t struct.Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (...
[svn-r18457] Purpose: Add test cases for bug1797 - h5repack doesn't handle references in compound and vlen datatypes for attributes Description:
Add test cases ahead as waiting for H5Acopy to complete the fix.
1. obj references in attr of compound type
2. region references in attr of compound type
3. obj references in attr of vlen type
4. region references in attr of vlen type
NOTE:
This test is skipped now and will be included when code part is completed.
( H5Acopy() replaces copy_attr() )
...
[svn-r18454] Purpose: Fix for the bug1726 - NPOESS: h5repack loses attributes for datasets of type H5T_REFERENCE.Description:
include test cases.
also test cases for attribute with object and region reference.
Tested:
jam, amani, linew
[svn-r18447] Purpose: Bug1727 - NPOESS: h5copy should copy region referencesDescription:
Tested and added test cases from previous checkin r18319
Reference Manual and tool's usage section for '-f ref' option is updated
for more comprehensibility.
Tested:
jam
[svn-r18445] Purpose: Fix bug 1637Description:
Modified algorithm for extending a dataset with early allocation so it only
deals with the new chunks. Formerly, it would loop over all chunks, checking
to see if each existed in cache and on disk, causing major performance issues
with large numbers of chunks.
Tested: jam, linew, amani (h5committest)
[svn-r18442] Purpose: Resolve windows build issue from previous checkin r18425Description:
The previous checkin was for bug1814 - NPOESS: h5repack doesn't handle
references to the groups as an element of a dataset
Tested:
jam
[svn-r18430] Add windows define BIND_TO_CURRENT_VCLIBS_VERSION=1 to project files.Corrected copy H5srcdir_str.h commands in script.
Added libsettings project to behave like h5tinit.vcproj.
[svn-r18425] Purpose: Fix for bug1814 - NPOESS: h5repack doesn't handle references to the groups as an element of a dataset Description:
handles object reference to named-datatype as well.
Add test cases.
Tested:
jam, amani, linew
[svn-r18420] Description: Re-run bin/reconfigure to catch up with recent rearrangements, remove some unused srcdir headers and duplicated code in main test header.Tested on:
Mac OS X/32 10.6.2 (amazon) w/debug & prod
Linux/32 2.6 (jam)
[svn-r18419] Description: Clean up srcdir querying code more, extracting it into single header file, to avoid compiler warnings.Tested on:
Mac OS X/32 10.6.2 (amazon) w/debug & prod
Linux/32 2.6 (jam)
[svn-r18415] Description: Move the libhdf5.settings information out of src/H5Tinit.c and into a separate header file (src/H5lib_settings.h), which is generated at build time (not configure time) with the src/H5make_libsettings generator program.Tested on:
Linux/32 2.6 (jam)
Mac OS X/32 10.6.2 (amazon)
[svn-r18413] Description: Unify srcdir handling for test executables and allow them to use the srcdir setting from configure time without requiring the 'srcdir' environment variable be set (although you still can, to override the built in setting). Attempted to get this right for Windows builds also. Also add dependency between src/H5Tinit.c and src/libhdf5.settings, so
that the test/testcheck_version.sh script works correctly.
Tested on:
Linux/32 2.6 (jam)
Mac OS X/32 10.6.2 (amazon)
Quincey Koziol
Neil Fortner
Raymond Lu
Scot Breitenfeld
Allen Byrne
Private HDF
Albert Cheng
Jonathan Kim