[svn-r16566] Description: Bring r16560 back from trunk.Tested on:
Mac OS X/32 10.5.6 (amazon) debug & production
(Following up with tests on more platforms)
[svn-r16562] Purpose: Bug Fix
Description:
Fixing BZ #1381. The --includedir=DIR configure option, which is used to
spceify installation location of C header files, did not work correctly as
the path was hard-coded into config/commence.am. I'm presuming this is
because an older version of automake didn't know where to put C header
files. In any case, removing this line now defaults the incl...
[svn-r16555] Purpose: Bug Fix
Description:
Removing the code from configure which strips the '-g' flag from CFLAGS
when in production mode. The current default CFLAGS in production mode
does not include '-g', as intended, but we should allow users to
override this and enable '-g' by setting the CFLAGS environment
variable if desired. Note that this applies to FCFLAGS and CXXFLAGS
as wel...
[svn-r16551] Bug #608: Memory leak in H5DSset_label. Added code to free sub string ptr's belonging to buffer in H5DSset_label and H5DSget_label. Also added free of buffers in error section of both functions. Potential memory leaks may exist elsewhere, and this will not close the bug. Tested:
h5committest
vista 32 VS2008
[svn-r16538] Added more test case for bypassing the cache. In test_big_chunks_bypass_cache, test the correctness of the data when the fill value is defined or not. The library should let the chunks bypass the cache depending on the size of the chunks and whether to write fill value to the chunks.Tested on jam - simple change.
[svn-r16536] Description: Bring v16532 back from trunk to v1.8 branch: Pass the chunk "user data" to H5D_chunk_unlock(), so that chunks with
an address already aren't reallocated.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
(h5committest not needed here, performed on trunk)
[svn-r16524] Purpose: Fix bugs related to H5Dset_extent and fill valuesDescription:
In some situations it was possible for the fill value to not be written to parts
of a chunked dataset, particularly when extending and/or shrinking. Prior to
the fix for the chunk cache (1015) these bugs would have been exceedingly rare.
Tested: jam, smirom, linew (h5committest)
[svn-r16522] Changed windows batch file due r16519 and r16520. As all windows OS are always LE on all platforms, simply added le to the two locations where these files are used.Tested:
Vista 32 VS2008
[svn-r16519] merge 16518 from trunkhave 2 expected outputs for 2 h5ls runs depending if run on a big or little endian machine. Configure.in was modified to export a variable carrying endianess information to testh5ls.sh. This script then compares the current run with 2 expected outputs, one for a big-endian machine (linew was used to generate the output), other for little endian (jam was used to generate the output)
the way h5ls...
[svn-r16515] To improve the performance of querrying the info of a link(bug #1404). When the index was set to creation order in querry function but there's no creation order indexed in the file, the library tried to build and sort a table of all links. To optimize it, let the library use the B-tree for names of links.Tested with h5committest.
[svn-r16512] merge 16511 from trunk bug fix: TESTING2 macro introduced recently for the test suite (it adds an extra space at the beginning of output, for indentation) was already available for HL and caused compilation problems on AIX. Replaced the name with TESTING_2
tested: h5committest
[svn-r16500] Description: Bring r16499 back from trunk: Cache chunk info for newly created chunk.
Tested on:
FreeBSD/32 6.3 (duty)
(Tests included in upcoming revise_chunks branch changes)
[svn-r16495] Description: Bring r16488 back from trunk: Clean up code and eliminate resource leaks. Also avoid "null" I/O when
chunk doesn't exist and we can skip it.
Tested on:
Mac OS X/32 10.5.6 (amazon)
(too minor to require h5committest)
[svn-r16494] Description: Bring r16483 back from trunk: Clean up (i.e. remove) more internal calls to H5E_clear_stack(), along with
some other minor code cleanups.
Tested on:
Mac OS X/32 10.5.6 (amazon)
(too minor to require h5committest)
[svn-r16490] Fixed bug #1459 by eliminating the macro long_long and replacing all instances with long long.Tested:
h5comittest
fedora 10 x64
XP32, VNET
[svn-r16487] Checkin for moving messages forward into continuation message: src/H5Oalloc.c, test/ohdr.c, toshm.c
Fixed couple of problems in src/H5Odbg.c.
h5committested.
[svn-r16481] Purpose: Improve chunk cacheDescription:
The meaning of the "nbytes" field in H5D_rdcc_t was not clear, and some places
assumed it was the maximum size of the chunk cache, while some assumed it was
the current size of the chunk cache. The end result was that only 1 chunk could
be held in cache at a time. This field has been replaced by "nbytes_max" and
"nbytes_used". Performance of cached I/O should improve greatly.
T...
[svn-r16478] Purpose: Fix problem with opening an attribute multiple times through multiple file handles.Description:
An attribute's "oloc" field which specifies the file it resides in was located
in the attribute's "shared" structure. So when an attribute was opened multiple
times all of the handles for that attribute pointed to the same file id, even if
different file id's were used to open the different handles for the attribute.
The "oloc" has been moved to the top level H5A_t struct.
Tested...
[svn-r16476] Purpose: Fix rare error when adding a new object header messageDescription:
Since the new object header format, it has been possible for a situation to be
created where none of the messages are large enough to hold a continuation
message and there are no null messages to merge with. This makes it impossible
to add a new object header chunk. This case will now be handled by moving every
message in the last chunk to the newly allocated one, except for null...
[svn-r16474] Purpose: fix problems related to 'self-referential' attributesDescription:
When an attribute was created with a datatype or dataspace that was shared in
the same object header that the attribute was in, the attribute could not be
deleted. Changes made to ensure that the attribute can be deleted both when the
attribute is in the object header and when it is shared in the heap. Object
header message decode routines now take an "open_oh" parameter to enabl...
[svn-r16471] Change H5Dopen to H5Dopen2 - fixes compile error - too many arguments for H5Dopen1 when using v1.6 compatible flag. Trivial change, tested on smirom and jam.
[svn-r16467] Performance Improvement(bug #1450). When a chunk is bigger than the cache size and isn't allocated on disk, the library still loaded it in the cache, which is redundant. I changed it to bypass the cache and added a test in dsets.c.
Tested on jam and smirom.
[svn-r16463] merge from trunkBug fix: for compound types, the not comparable test for members was not done
Solution: for compound types, recursively apply that check
Two new cases are added
1) the compound type has a different number of members. Message printed is
<obj1> has X members <obj2> has Y members
Where X and Y are the number of members of each compound type being compared
2) the compound type has not comparable ty...
[svn-r16460] Maintenance: Brought VMS test script for h5copy up-to-date. Added h5copy testing to the build script.Platforms tested: New script on ALPHA Open VMS server;
build script will be tested tonight.
[svn-r16458] Maintenance: One of the h5diff tests failed due extra line that system adds to the output. I added /comment_delim qualifier to the diff command to pacify the test script.Platforms tested: Alpha VMS server
[svn-r16456] Maintenance: Brought h5repack and h5diff test scripts up-to-date. Modified build script to reflect the change.Platforms tested: tested tools scripts on the VMS server; build script will
be tested tonight.
[svn-r16452] Repaired intermittant failure of the t_cache test in testpar.The failure was caused by some over active sanity checking code in
unlock_entry(). In essence the code did not consider the possibility
that under certain, very unusual circumstances, an entry could be flushed
to disk during the H5AC_unprotect() call. Instead, it simply failed
if a dirty entry was marked clean after the call to H5AC_unprotect().
This bug in the test code was exposed by recen...
[svn-r16440] Description: Bring r16435 from revise_chunks branch back to 1.8 branch: Expand object copy tests for chunked datasets to include 1-D datasets
with an unlimited dimension. (Fix typo in comment for test/links.c)
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
(more thoroughly tested already on revise_chunks branch)
[svn-r16427] Purpose: Fix Windows install script to include missing tool binariesDescription:
A user discovered that the HDF5 1.8.2 Windows release binaries were missing a few of the HDF5 tools. This is due to the Windows install script, which simply didn't include them. This commit fixes the install script to include h5copy, h5mkgrp, and h5stat
Tested:
VS2005 w/ WinXP, build and install only
[svn-r16424] Purpose: Remove old Fortran source file from Windows projects.Description:
In svn rev. 16197, H5fortran_flags.f90 was removed from HDF5. This checkin removes references from our Windows projects, and will allow us to successfully build HDF5 Fortran on Windows.
Tested:
VS2005 w/ IVF 9.1 on WinXP
[svn-r16420] merge from trunk #1449 Change set_extent test to use standard standalone test framework
Call h5_fixname (with an array of test filenames) for generating the
filename to create and then call h5_cleanup() when the tests pass, to delete the files
created and close the FAPL from h5_fileaccess().
Defined a macro
#define TESTING2(WHAT) {printf(" Testing %-62s",WHAT); fflush(stdout);}
Similar to TESTING, except that it has a initial indentation space.
The effect is for nested l...
[svn-r16418] Description: Bring r16417 from trunk to 1.8 branch: Bring closer to standard standalone test format, add checks for using
the latest file format and close dataset ID leaked.
Tested on:
FreeBSD/32 6.3 (duty)
(too minor to require h5committest)
[svn-r16415] Description: Bring r16414 from trunk into 1.8 branch: Eliminate some more calls to H5E_clear_stack() from within library code.
Clean up some warnings & comments also.
Tested on:
Mac OS X/32 10.5.6 (amazon)
(Too minor to require h5committest)
[svn-r16411] testh5ls.bat - added tests to match script file from rev 16310 h5repack.bat - added test to match script file from rev 16402 set_extent.vcproj - added WS2_32.lib for change to set_extent from rev 16406Tested:
Vista32, XP32, XP64 using VNET, VS2005 VS2008
Quincey Koziol
Mike McGreevy
Allen Byrne
Neil Fortner
Raymond Lu
Private HDF
Pedro Vicente Nunes
Elena Pourmal
Vailin Choi
Larry Knox
John Mainzer
Scott Wegner