[svn-r17002] Description: Rename H5O_protect/H5O_unprotect to be H5O_pin/H5O_unpin, since that's what that are actually doing. Add counter of the number of times the object header is pinned, to allow
H5O_pin/H5O_unpin to be called reentrantly.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
...
[svn-r16997] Description: Change previous "depend/undepend" routine names to be "support/unsupport" and add new "depend/undepend" routines, which make the extensible array a child flush dependency of another piece of metadata in the file.Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
...
[svn-r16982] Description: Add library private routines to allow metadata cache entries to be set as flush dependency children on extensible array entries. This will allow chunk proxies to be set as child flush dependencies for the extensible array, adding another necessary layer to the flush dependency chain for SWMR access.Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
...
[svn-r16980] Purpose: Add new Windows def. for HDstroull, as the function isn't natively available.Description:
Tests were failing for the HDF5 trunk on Windows because Windows does not provide the strtoul function. However, there is a replacement, _strtoui64. This definition has been added to the H5win32defs.h file, similar to other such replacement functions.
Tested:
VS2005 on Vista
h5committest
[svn-r16947] 1. #1522 (B1) h5ltread_dataset_string_f error with g95ISSUE: h5ltread_dataset_string_f causes library assertion with g95.
SOLUTION: convert the fortran string buffer to a C buffer with HD5f2cstring, and pass this string to the C function
TEST: added a test call in the fortran test lite program
DOCS: added the note in RELEASE.txt "- Lite: the h5ltread_dataset_string_f and h5ltget_attribute_string_f functions had memory problems with the g95 fortra...
[svn-r16938] Purpose: Modifying default cache configuration, and adding an #ifdef to allow for a
separate default configuration when parallel is enabled. This is being
modified in order to address an observed performance problem with the
current default configuration.
Description of Changes:
- increasing maximum cache size from 16MB to 32MB
- increasing maximum entry size from 10MB to 32...
[svn-r16880] Fixed a bug in H5LTtext_to_dtype. When the data type is enumerate and the super type is different from the native integer, the value wasn't converted. I fixed it and corrected the test, too.Tested with h5committest.
[svn-r16869] Description: Reduce overhead for func enter/leave & error handling macros. (Reduces object code size by ~20% for production/~10% for debug, with gcc)Tested on:
Mac OS X/32 10.5.6 (amazon)
(Too minor to require h5committest)
[svn-r16858] Description: Tweak down the size of datatype created for dataset, so that the elements are a reasonable size and the dataset's size can fit into a 64-bit value for storing in the file.Tested on:
FreeBSD/64 6.3 (liberty)
(too minor for h5committest)
[svn-r16849] Description: Bring r16848 from revise_chunks branch to trunk: Add test (and bugfixes) for detecting if a filter makes a chunk size
larger than can be encoded in a 32-bit variable (in the file).
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
(h5committest not needed, multi-platform testing done on branch)
[svn-r16847] Description: Bring r16846 from revise_chunks branch back to trunk: Fix broken (for how long?) H5_ASSIGN_OVERFLOW macro to actually detect
overflows during assignments, along with several errors it [now] detected.
Cleaned up a fix minor warnings and/or pieces of code also.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
(h5committest not needed - multi-platform test performed on branch)
[svn-r16844] Description: Adding dependency to h5repack test script.
h5repack.sh needs h5repacktst to run first.
Tested:
Problem only appeared on Glory, but tested the dependence
manually on jam by trying to run only the script and checking
that it first ran the h5repacktst test program.
[svn-r16842] Bug fix: If the AR command has embedded shell separators such as the case of "AR = ar -X 64", $AR ends up as a blank.Solution:
Put quotes around the command substitution string to protect against embedded
separators. Applied the same to both AR and RANLIB assignments.
Tested:
At Up (AIX 5.3) only because that was where I discovered the error
when AR is ar -X 64
[svn-r16829] Bug fix. In Up (AIX system), the insert_libhdf5_settings() infinite looped because it never found EOF. Man getc in another system said: "If the integer value returned by getc() is stored into a variable of type char and then compared against the integer constant EOF, the com- parison may never succeed, because sign-extension of a variable of type char on widening t...Solution:
Changed inchar from type char to int fixed the problem.
Morale of the story: RTFM or HTCW (heed the compiler warnings).
Tested:
Up (AIX 5.3).
[svn-r16816] Description: Added member function Attribute::getInMemDataSize(), which is a wrapper of several C calls, to simplify getting the attribute's data size in memory. Used this new function in Attribute::read to get the fixed-len string attribute data. Added tests to tattr.cpp.
Platforms tested:
Linux/32 2.6 (jam)
FreeBSD/64 6.3 (liberty)
SunOS 5.10 (linew)
[svn-r16815] Description: Added member function Attribute::getInMemDataSize(), which is a wrapper of several C calls, to simplify getting the attribute's data size in memory. Used this new function in Attribute::read to get the fixed-len string attribute data. Added to tests in tattr.cpp.
Platforms tested:
Linux/32 2.6 (jam)
FreeBSD/64 6.3 (liberty)
SunOS 5.10 (linew)
[svn-r16814] New feature(Bug 230): Embed the content of libhdf5.settings into the hdf5 executables so that an "orphaned" executables can display (via the Unix strings command, for example) the library settings used to build the executables.This is a prototype implementation. Much improvement is needed.
configure.in:
Added the --disable-embedded-libinfo option to disable this feature.
configure:
src/H5config.h.in:
Generated by autotools like automake.
src/H5detect.c:
Implement insert_libhdf5_settings() to insert the contents of
libhdf5.settings into the library as an extern string variable so that it
is includ...
[svn-r16807] Purpose: Fix bug 1533Description:
Previously, there was no versioning for H5Z_class_t. This prevented applications
written for 1.6 using custom filters from being able to use the 1.8 library.
There is now an H5Z_class1_t and H5Z_class2_t to enable compatibility. H5Zregister is
*not* versioned, it determines which version of the struct has been passed in by the
value of the first field (id or version, both are int...
[svn-r16806] Purpose: Add new h5repack tests to WindowsDescription:
Three new tests were added to the h5repack test script in rev.16802. This checkin brings those new tests to Windows as well.
Tested:
VS2005 on WinXP x64
[svn-r16803] Purpose: Fix bug 1548Description:
When writing data to a dataset, the data transform was performed after type conversion.
This caused an error if the file type was non-native. This has been changed so data
transforms are always performed on the memory type.
Tested: jam, linew. smirom (h5committest)
[svn-r16800] Purpose: Fix bug 1516Description:
h5repack previously would not take named datatypes into consideration when copying
datasets and attributes. This would cause extra anonymous datatypes in the target file
at best, and cause errors halfway through the repacking at worst. h5repack should now
always handle named datatypes correctly. Named datatypes are also now converted to the
native type when -n is given.
Tested:...
[svn-r16797] Changed H5D_CHUNK_CACHE_NSLOTS_DEFAULT_F
H5D_CHUNK_CACHE_NBYTES_DEFAULT_F
H5D_CHUNK_CACHE_W0_DEFAULT_F
to
H5D_CHUNK_CACHE_NSLOTS_DFLT_F
H5D_CHUNK_CACHE_NBYTES_DFLT_F
H5D_CHUNK_CACHE_W0_DFLT_F
to get under the 31 limit for variable names
[svn-r16796] Changed H5D_CHUNK_CACHE_NSLOTS_DEFAULT_F
H5D_CHUNK_CACHE_NBYTES_DEFAULT_F
H5D_CHUNK_CACHE_W0_DEFAULT_F
to
H5D_CHUNK_CACHE_NSLOTS_DFLT_F
H5D_CHUNK_CACHE_NBYTES_DFLT_F
H5D_CHUNK_CACHE_W0_DFLT_F
to get under the 31 limit for variable names
[svn-r16792] Description: - Updated bin/reconfigure to use latest version of automake (1.10.2).
Re-generated Makefile.in's by running bin/reconfigure.
- Added libtool version numbers to c++, fortran, hl, hl c++, and hl fortran
libraries.
Tested:
jam, liberty, smirom
[svn-r16789] Bug Fix (Bug 1398): For gcc v4.3 and v4.4, with production mode, if -O3 is used, H5Tinit.c would fail to compile. Actually bad H5Tinit.c is produced.If -O (same as -O1) is used, H5Tinit.c compiled okay but test/dt_arith
would fail with:
Testing hard normalized long double -> signed char conversions time: comm
and terminated abnormally
When -O0 (no optimizatio) is used, H5Tinit.c compilete okay and all tests
passed.
Solution:
Changed the config/gnu-flags to use -O0 for gcc v4.3 and 4.4 for production
flags for now so that build and...
[svn-r16787] Description: Fixed to pass parameters to H5Awrite/H5Aread correctly so that all Attribute::write and Attribute::read methods work correctly for both fixed-length and variable-length string attributes. Added more test cases.
Platforms tested:
Linux/32 2.6 (jam)
FreeBSD/64 6.3 (liberty)
SunOS 5.10 (linew)
Quincey Koziol
Larry Knox
Pedro Vicente Nunes
Scott Wegner
Allen Byrne
Raymond Lu
Mike McGreevy
Christian Chilan
Albert Cheng
Frank Baker
Neil Fortner
Binh-Minh Ribler
Scot Breitenfeld