[svn-r17461] Description: Fix a few more problems when the user block is not aligned properly.Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
...
[svn-r17459] Description: Correct bad interaction between non-zero userblocks with non-zero alignments. Also add some additional range checking and tests for invalid userblock
sizes.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/s...
[svn-r17455] Description: Correct a 'hsize_t *' to 'hsize_t' and vice versa.Tested on:
Mac OS X/32 10.5.8 (amazon) in debug mode
Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
(too minor to require h5committest)
[svn-r17454] Bug fix. (Daily test failure).Generic function name is used but that would fail when v16API is used.
Changed the H5Dcreate() and H5Acreate() to v18 names as H5Dcreate2() and H5Acreate2().
tested: jam (regular and --with-default-api-version=v16).
[svn-r17440] Purpose: Add warning to configure
Description:
Patched up the configure script to issue a warning when the user
has supplied the --enable-static-exec flag on a system that libtool
indicates does not support the -static linker flag.
Tested:
jam, smirom, linew, liberty.
[svn-r17418] Maintenance: At some point the part of the file was lost; restored. I am cheking in the file and then will test different scripts
to make sure that they do not destroy the file.
(I've already tested bin/h5vers and bin/release in 1.8 ).
Similar check-in for 1.8 will follow.
[svn-r17414] Description: Flush the core VFD's buffer before closing the file, also flush the metadata accumulator before reseting it. Write the driver info message out in the superblock flush routine more directly, instead of using wrapper routine, since the wrapper routine won't work when the superblock is being shutdown.Tested on:
FreeBSD/32 6.3 (duty) in debug mode, w/check-vfd
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode, w/check-vfd
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode, w/check-vfd
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & ...
[svn-r17413] Description: Remove vestigial intermediate routine for flushing file and move it into API routine. Also, remove private, unused (now) 'H5F_FLUSH_DOWN' symbol from public header file.Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Sol...
[svn-r17411] Description: Make H5AC_flush just flush the cache and make H5AC_dest perform the proper parallel synchronization before destroying the cache. Also, further discriminate between 'closing' and 'non-closing' actions in H5F_flush.Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Sol...
[svn-r17405] I added a condition check for the conversion from unsigned to float. When the configure detects the conversion working, a macro is set. If there's problem with this conversion like Pathscale compiler, skip the test.Tested on jam. Need to verify it on pathscale machine.
[svn-r17403] Description: Eliminate 'closing' flag to dataset flush routine, since all cached dataset information has already been flushed when a file is closed and the datasets themselves will be closed (and the dataset caches destroyed). Skip calling more flush routines when the file is closing, in preparation
for eventual separation of the 'flush' concept from the 'shutdown the cache'
concept.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (s...
[svn-r17402] Description: Switch from using a 'flags' parameter to the flush routine(s), to just using a single 'closing' boolean parameter, since that's all we're doing with the flags anyway and this makes things more obvious.Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,...
[svn-r17400] Description: Refactor H5F_flush into two routines, one which handles the recursion/ iteration necessary to handle mounted files; and one which just handles the flush operation for a single file. Also, remove H5F_FLUSH_INVALIDATE and switch all code to depend on
H5F_FLUSH_CLOSING.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in ...
[svn-r17398] Description: First set of changes to move VFD 'truncate' call out of H5F_flush and defer it until the file is closed.Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,...
[svn-r17393] Description: Bring back more changes from the file free space branch to the trunk.Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Sol...
[svn-r17392] I added a detection for the correctness of converting from unsigned long to float in the configure.in. The Pathscale compiler on Sandia's Linux machine misinterprets the values of unsigned long as negative during the conversion to float, when the first bit of unsigned long is on. Tested on jam. Need to test it on Sandia's machine.
[svn-r17388] Description: Correct error in freespace test which was relying on free space section to be valid after the library had taken ownership of it (and therefore could free it). Also correct some checking for return values of H5FS internal routines
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
...
[svn-r17376] Description: Make similar change to windows VFD as sec2 VFD, when converting from a family file to a single file. Tweak file sizes expected for parallel tests.
Tested on:
tg-login3, w/parallel
Windows (post facto)
[svn-r17373] Added new file to library project. Also removed unused project settings. These were per file settings that should not be used unless a file needs them.Tested: Windows
[svn-r17365] Description: Final merge of changes from sblock_mdc branch back to trunk. The superblock is now managed by the metadata cache.Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Sol...
[svn-r17357] Purpose: Header Installation Fix
Description:
Updated the bin/install-sh script with the copy from the new Automake 1.11
distribution. This addresses the problem with Solaris only copying the
first header file on the one-line command to the install directory.
Tested:
Linew, Jam, Liberty, Smirom:
- build, test, install, installcheck.
[svn-r17351] Description: Clean up code (to align w/future sblock_mdc branch changes), tweak tests for [slightly] easier debugging, fix memory leak when copying chunked datasets with I/O filters, fix memory leak of free space section when it was exactly the right size to use for extending an existing block in the file.Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Sol...
[svn-r17345] Purpose: Updating autotools
Description:
Installed new autotools and used them to reconfigure HDF5.
- Automake upgraded to 1.11
- Autoconf upgraded to 2.64
- bin/reconfigure script edited to use new versions (on jam), and
run to generate new configure script and Makefile.in's.
- configure.in script edited to add "_cv_" to all AC_CACHE_VAL strings
(in order to compl...
[svn-r17336] Description: Bring more changes from the file_free_space branch into the trunk.Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Sol...
[svn-r17328] Added the recognization of PathScale compilers. Also added the knownproblem of PathScale MPI failure when accessing a Panasas file system.
[svn-r17318] Did some code cleanup. t_file.c: replace the old variable, color, with a more meaningfule name of is_old. t_mpi.c: use the official mpi_file_delete, instead of remove, to delete a file in MPI environment.Tested:
Only jam in parallel as changes are trivial.
[svn-r17313] Description: Bring back various minor code cleanups from the file free space branchTested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Sol...
[svn-r17302] Description: Correct errors on machines (like Windows) that don't have C99 named initializer support.Tested on:
Mac OS X/32 10.5.7 (duty)
Windows build (by Allen)
Quincey Koziol
Allen Byrne
Albert Cheng
Mike McGreevy
Larry Knox
Elena Pourmal
Raymond Lu
Peter Cao