[svn-r16758] The test of family file compatibility with v1.6 used the original family files under the library source directory. Since the test opens the files with write mode, it's safer to make copies of the original files. I added the copying step in test_family_compat in vfd.c. I changed the Makefile.am to clean up the copied files. I created a new family_v16_00000.h5 with v1.6 library.Tested on jam - supposed to be simple change.
[svn-r16755] bug fix (ID 1345): Use environment variable instead of command parameter to test the install via $DESTDIR test.Tested:
Jam by hand. (no h5committest which does not test this change.)
[svn-r16750] New feature (Bug ID: 1345): Added a Make target of check-all-install to test the correctness of installing via the prefix= or $DESTDIR options.Platforms tested:
h5committested and jam serial mode. Then test check-all-install by hand.
[svn-r16743] Added #include <direct.h> to windows section. As discussed in Bug 1536, this include is needed to supply the _getcwd() function.Tested: XP 32 VS2005
[svn-r16732] added 2 new entries - h5diff new flag, -c, --compare, list objects that are not comparable.
PVN - 2009/4/2 - 1368
- h5diff new flag, -N, --nan, avoids NaNs detection. PVN - 2009/4/2
[svn-r16731] Purpose: Fix bug 1539bDescription:
The H5L interface was not marked as uninitialized when H5L_term_interface was
called. This caused the interface to not initialize itself later on. This
prevented external links from working after calling H5close, because they were
never re-registered.
Tested: jam, smirom, linew (h5committest)
[svn-r16722] Purpose: Fix problems with "no strict format checks"Description:
Changed H5G_mkroot to be tolerant of files with symbol table information cached
but no symbol table in the root group. Also changed H5G_mkroot to properly
clean up in case of an error, and changed H5G_stab_is_valid to properly detect
errors in H5O_msg_read.
Tested: jam, linew, smirom (h5committest), jam (--disable-strict-format-checks)
[svn-r16712] Purpose: Fix bug 1423Description:
Versions of the library between 1.3.0 and 1.6.3 have a bug which prevents them
from opening any file that does not have the root group's symbol table
information cached in the root group's entry in the superblock. Prior to 1.8
this was not an issue as this information was always cached. However, 1.8.0
stopped writing this information (which is not required by the file format
spec...
[svn-r16707] merge 16706 from trunk#1538 (B2) Problems with Dim Scale APIs reported by Mathworks
ISSUE2: the scale index input/output parameter value passed to H5DSiterate_scales was not always incremented (it returns the scale index current iteration).
SOLUTION FOR ISSUE2: modified the cycle in H5DSiterate_scales so that the scale index is always incremented
TEST: added some test cases with calls to invalid indices and H5DSite...
[svn-r16703] Purpose: Improve performance of factory free lists.Description:
Factory free lists were formerly implemented as block free lists. This was
inefficient as factories can only be one size, and implementing them as blocks
(which can be variable size) wasted computation and space. They have been
rewritten with a separate implementation, which is simlar to regular free lists
except they can be dynamically created and destroyed.
Tested: jam, linew,...
[svn-r16699] Purpose: Fix bug 503Description:
Changed Skip list package to use a deterministic skip list. This allows the
skip list package to avoid calling rand() and srand(), even on machines without
rand_r(). There is no longer a p-value or maximum level for skip lists.
Tested: jam, smirom, linew (h5committest)
[svn-r16697] merge 16696 from trunk#1538 (B2) Problems with Dim Scale APIs reported by Mathworks
ISSUE: When some functions are called with an invalid dimension index (for example, greater than the rank of the dataset) the function does not immediately fail, rather asserts down the code.
SOLUTION: added this check for H5DSdetach_scale, H5DSset_label, H5DSget_label (the other functions have this check) . H5DSiterate_scales also a...
[svn-r16695] Purpose: Fix bug 1526Description:
Previously, H5Lcopy and H5Lmove would (through H5L_move) improperly apply the
"create intermediate groups" property to the source path traversal, and not the
destination. Fixed it to apply the property to the destination and not the
source. Also fixed H5Lcreate_ud to reject internal link classes without
throwing an assertion.
Tested: linew, jam, smirom (h5committtest)
[svn-r16680] Description:Fixed warnings from absoft's compiler for !DEC$ statements.
Solution: There should not be a space after !DEC$ statements, removed the spaces.
Platforms tested:
Jam with gcc and f95
[svn-r16677] merge 16676 from trunk#1521 (B2) H5DSdetach_scale memory leak
ISSUE: Purify (Windows Visual Studio 6) complains of a memory leak in H5DSdetach_scale call regarding a H5Aread call (stack is H5A_read, H5T_convert, H5T_conv_vlen, H5T_vlen_seq_mem_write, H5MM_malloc).
SOLUTION: When a scale is detached from a dataset, the variable length structure length field is decreased in one entry. The associated pointer must be ...
[svn-r16664] merge 16663 from trunknote : lots of weird warnings of the type
../../../../hdf5/tools/h5repack/h5repacktst.c:3919: warning: will never be executed
appear on the same code as 1.9 for the 1.8 branch
tested: linux
[svn-r16662] Remove command to copy h5Tinit.c in copy batch file. H5Tinit.c is generated during build and no longer exists in the windows/src folder.Tested: XP64 VS2005
[svn-r16658] merge from trunk 16656#1402 (B1) h5repack does not preserve creation order indexing.
ISSUE : h5repack does not handle group creation order flags.
ACTION: call H5P(g)(s)et_link_creation_order functions when handling groups, add new groups with these flags to the test generation program, and verify results in the test program.
TEST: in the test program, function that compares property lists, added code to verify gr...
[svn-r16652] Bug fix #1503 - H5Iget_type failed unexpected when an invalid ID was passed in. I put some argument check in the internal function H5I_find_id and took out the assertion check. I also removed the argument check in H5Iis_valid because it's in H5I_find_id now.Tested on jam and linew - simple change.
[svn-r16641] merge from trunk revs 16614, 166291. #1501 (B1) tools bug if dataset is larger than H5TOOLS_BUFSIZE limit.
ISSUE : the tools use the following formula to read by hyperslabs: hyperslab_size[i] = MIN( dim_size[i], H5TOOLS_BUFSIZE / datum_size) where H5TOOLS_BUFSIZE is a constant defined of 1024K. This is OK as long as the datum_size does not exceed 1024K, otherwise we have a hyperslab size of 0 (since 1024K/(greater than 1024K)...
[svn-r16616] Purpose: Fix bug 1499Description:
Due to a bug in H5F_super_read, every time a file with a user block was opened
it would grow by the size of the user block. The bug has been fixed, and
comments have been added to clarify when an eoa address should be relative and
when it should be absolute.
Tested:
jam, linew (h5committest)
[svn-r16613] In previous checkin (r16609), the flag "write_driver" wasn't necessary as Quincey pointed out. I took it out and used the driver address instead.Tested on jam - simple change.
[svn-r16608] Bug fix (#1161): When a family file created with v1.6 library is opened and closed with v1.8 library, v1.8 library writes the driver info block in the superblock. But v1.6 doesn't write it. This caused the data after the superblock to be overwritten. The solution is to use a flag to indicate when the original file doesn't have the driver info, v1.8 library doesn't write it either.Tested on jam. I have some trouble to access smirom and linew using h5committest.
[svn-r16598] merge 16597 from trunk #1047 (B1) The h5lt info routines are returning data in transposed form. ISSUE : the dimension array of the function h5ltget_dataset_info_f was not transposed (because of C-FORTRAN storage order, the FORTRAN function calls the C function with the same name). SOLUTION: transpose the array. ACTION: add a test case.added the note
Fortran High-Level APIs:
------
- Lite: The h5ltget_dataset_info_f function (gets information about a dataset)
was not correctly returning the dimension array (PVN - 2009/3/23)
tested: linux
[svn-r16595] Purpose: fix bug 1189Description:
Some files apparently exist in the wild which have corrupt symbol table messages
on the root group. These files can be opened by 1.6 (which uses the cached
information in the superblock) but not by 1.8. This patch fixes 1.8 and 1.9 so
they can now open these files, and will correct them if necessary. Also fix
some potential (rare) problems with array datatype versions.
Tested: ...
[svn-r16589] merged from trunk: 165881. #1487 (B1) DS memory leaks ISSUE 1: On a "go to" error condition, previously allocated buffers were not freed. NOTE: these are "potential" memory leaks because typically the error conditions do not occur, so the potential memory leaks also do NOT occur. ISSUE 2: A function used to read dimension scales realistic data (topography of the North Atlantic, latitude and longitude) was being called...
[svn-r16575] Description: Bring r16574 back from trunk: Clean up many compiler warnings and make test return non-zero exit code
when a failure is detected.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
(other platforms tested on trunk)
[svn-r16572] #1462 By selecting a compression type, a big endian byte order was being selected. When reading the compression parameter keyword, the compression type read flag was incorrectly set to read, removed this line of code in->configOptionVector[COMPRESS] = 1;
Modified one configuration file to have the COMPRESSION-TYPE GZIP
Keyword.
Entered a bug description fix of
- h5import: By selecting a compression type, a big endian byte order was being
selected (PVN - 2009/11/3)
tested: linux
[svn-r16566] Description: Bring r16560 back from trunk.Tested on:
Mac OS X/32 10.5.6 (amazon) debug & production
(Following up with tests on more platforms)
[svn-r16562] Purpose: Bug Fix
Description:
Fixing BZ #1381. The --includedir=DIR configure option, which is used to
spceify installation location of C header files, did not work correctly as
the path was hard-coded into config/commence.am. I'm presuming this is
because an older version of automake didn't know where to put C header
files. In any case, removing this line now defaults the incl...
Raymond Lu
Albert Cheng
Allen Byrne
Larry Knox
Neil Fortner
Pedro Vicente Nunes
Scot Breitenfeld
Quincey Koziol
Mike McGreevy